Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
17763 | 3' | -50.8 | NC_004629.1 | + | 173110 | 0.66 | 0.998424 |
Target: 5'- uUUCCAGcgGCaUGCGCU--UAGCGGg -3' miRNA: 3'- -AAGGUCuaCGcAUGUGGuaAUCGCUa -5' |
|||||||
17763 | 3' | -50.8 | NC_004629.1 | + | 195827 | 0.66 | 0.998112 |
Target: 5'- gUCgCAGAUGaagGUGCACCAggUAGCa-- -3' miRNA: 3'- aAG-GUCUACg--CAUGUGGUa-AUCGcua -5' |
|||||||
17763 | 3' | -50.8 | NC_004629.1 | + | 87649 | 0.66 | 0.997749 |
Target: 5'- cUCUAGAacUGCGUguaauGCGCCAUggUGGCGu- -3' miRNA: 3'- aAGGUCU--ACGCA-----UGUGGUA--AUCGCua -5' |
|||||||
17763 | 3' | -50.8 | NC_004629.1 | + | 225191 | 0.68 | 0.991087 |
Target: 5'- gUCCAGAUGgGcuaAUCAUUAGUGAg -3' miRNA: 3'- aAGGUCUACgCaugUGGUAAUCGCUa -5' |
|||||||
17763 | 3' | -50.8 | NC_004629.1 | + | 9012 | 0.72 | 0.930989 |
Target: 5'- cUCCGaGUGgGUACACCAUUcagcaAGCGGUg -3' miRNA: 3'- aAGGUcUACgCAUGUGGUAA-----UCGCUA- -5' |
|||||||
17763 | 3' | -50.8 | NC_004629.1 | + | 232097 | 1.03 | 0.029526 |
Target: 5'- gUUCCAGAUGCGUACACCAUUAGCGAUc -3' miRNA: 3'- -AAGGUCUACGCAUGUGGUAAUCGCUA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home