miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17767 3' -38.2 NC_004629.1 + 182211 0.71 1
Target:  5'- ----cGAGUGAAAGGAcgAGCCUUAg -3'
miRNA:   3'- aaauuCUUAUUUUCUUaaUCGGGAUg -5'
17767 3' -38.2 NC_004629.1 + 195499 0.68 1
Target:  5'- --aAAGAAgau-AGAucuAUUAGCCCUAg -3'
miRNA:   3'- aaaUUCUUauuuUCU---UAAUCGGGAUg -5'
17767 3' -38.2 NC_004629.1 + 50568 0.68 1
Target:  5'- ---uGGAAUGuuacGGAGcuuggcugcuGAUUGGCCCUACc -3'
miRNA:   3'- aaauUCUUAU----UUUC----------UUAAUCGGGAUG- -5'
17767 3' -38.2 NC_004629.1 + 191956 0.67 1
Target:  5'- ---uGGAGUAAAAGuAUUAGCUUUGg -3'
miRNA:   3'- aaauUCUUAUUUUCuUAAUCGGGAUg -5'
17767 3' -38.2 NC_004629.1 + 51026 0.66 1
Target:  5'- --aAAGAaauaAUAGGGGAGUUAGacucCCCUAUu -3'
miRNA:   3'- aaaUUCU----UAUUUUCUUAAUC----GGGAUG- -5'
17767 3' -38.2 NC_004629.1 + 217476 0.66 1
Target:  5'- --cAGGAAUAAugguuguAGAuauUUAGCCuCUACc -3'
miRNA:   3'- aaaUUCUUAUUu------UCUu--AAUCGG-GAUG- -5'
17767 3' -38.2 NC_004629.1 + 43061 0.66 1
Target:  5'- aUUAGGAuccau-GGAUUAGCCCc-- -3'
miRNA:   3'- aAAUUCUuauuuuCUUAAUCGGGaug -5'
17767 3' -38.2 NC_004629.1 + 169766 0.68 1
Target:  5'- --gAAGAAuUAGAAGAAUUaaaaAGCUCUAa -3'
miRNA:   3'- aaaUUCUU-AUUUUCUUAA----UCGGGAUg -5'
17767 3' -38.2 NC_004629.1 + 50288 0.68 1
Target:  5'- aUUUAGGAAUAGGAGAA--GGUUCaACg -3'
miRNA:   3'- -AAAUUCUUAUUUUCUUaaUCGGGaUG- -5'
17767 3' -38.2 NC_004629.1 + 167645 0.69 1
Target:  5'- -aUGAGAAUGAAGGuAUUuaaagcauaAGCCCUc- -3'
miRNA:   3'- aaAUUCUUAUUUUCuUAA---------UCGGGAug -5'
17767 3' -38.2 NC_004629.1 + 153818 0.7 1
Target:  5'- -aUAAGGAUAAAuAGAAUUAGCUa--- -3'
miRNA:   3'- aaAUUCUUAUUU-UCUUAAUCGGgaug -5'
17767 3' -38.2 NC_004629.1 + 34581 0.7 1
Target:  5'- --aAGGAAUAAucauGAA-UAGCCUUGCa -3'
miRNA:   3'- aaaUUCUUAUUuu--CUUaAUCGGGAUG- -5'
17767 3' -38.2 NC_004629.1 + 97186 0.76 0.999999
Target:  5'- -aUAAGAGUcaagcuaaGAAAGAAgcagUAGCUCUACg -3'
miRNA:   3'- aaAUUCUUA--------UUUUCUUa---AUCGGGAUG- -5'
17767 3' -38.2 NC_004629.1 + 114138 1.1 0.220031
Target:  5'- uUUUAAGAAUAAAAGAAUUAGCCCUACu -3'
miRNA:   3'- -AAAUUCUUAUUUUCUUAAUCGGGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.