miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17768 5' -51.7 NC_004629.1 + 118470 0.66 0.99773
Target:  5'- uGCUACCaUGGCUGCuauCGCCuguGCUGa- -3'
miRNA:   3'- -UGAUGG-GUCGACGuu-GUGGu--UGAUga -5'
17768 5' -51.7 NC_004629.1 + 58780 0.66 0.99773
Target:  5'- --aACCCuGCUG-AACgAUCAACUGCUg -3'
miRNA:   3'- ugaUGGGuCGACgUUG-UGGUUGAUGA- -5'
17768 5' -51.7 NC_004629.1 + 151057 0.66 0.996837
Target:  5'- gGCUGCCUcauuGGCaaCAGCACCAguaauaACUACg -3'
miRNA:   3'- -UGAUGGG----UCGacGUUGUGGU------UGAUGa -5'
17768 5' -51.7 NC_004629.1 + 47584 0.66 0.996292
Target:  5'- gGCUGCU--GCUGCGGCAUCcAUUGCg -3'
miRNA:   3'- -UGAUGGguCGACGUUGUGGuUGAUGa -5'
17768 5' -51.7 NC_004629.1 + 198689 0.66 0.996292
Target:  5'- gACUAaCCCAGCUGCuAUGCCuggugauaaucuGACUGa- -3'
miRNA:   3'- -UGAU-GGGUCGACGuUGUGG------------UUGAUga -5'
17768 5' -51.7 NC_004629.1 + 197891 0.67 0.994179
Target:  5'- aACUGCuucaCCAaUUGUuGCACCAGCUGCUu -3'
miRNA:   3'- -UGAUG----GGUcGACGuUGUGGUUGAUGA- -5'
17768 5' -51.7 NC_004629.1 + 81159 0.67 0.99329
Target:  5'- --aACCUugGGUUGCAGCACCcguuucACUACUu -3'
miRNA:   3'- ugaUGGG--UCGACGUUGUGGu-----UGAUGA- -5'
17768 5' -51.7 NC_004629.1 + 21290 0.67 0.99329
Target:  5'- --aACCCAGCcGCuGCugCGcauACUACUg -3'
miRNA:   3'- ugaUGGGUCGaCGuUGugGU---UGAUGA- -5'
17768 5' -51.7 NC_004629.1 + 73839 0.68 0.983649
Target:  5'- ----aUCAGCUGCGGCAgugaugcuCCAACUGCa -3'
miRNA:   3'- ugaugGGUCGACGUUGU--------GGUUGAUGa -5'
17768 5' -51.7 NC_004629.1 + 84404 0.69 0.981682
Target:  5'- aGCUACCCGG-UGCAAUgaACUAuCUACa -3'
miRNA:   3'- -UGAUGGGUCgACGUUG--UGGUuGAUGa -5'
17768 5' -51.7 NC_004629.1 + 111511 0.69 0.981682
Target:  5'- gACUugCUgagcuauGCUGCAACACCAA-UACg -3'
miRNA:   3'- -UGAugGGu------CGACGUUGUGGUUgAUGa -5'
17768 5' -51.7 NC_004629.1 + 196008 0.69 0.977223
Target:  5'- uGCUGCCuCAGCUGCuuuuaaauuCACUAAC-ACa -3'
miRNA:   3'- -UGAUGG-GUCGACGuu-------GUGGUUGaUGa -5'
17768 5' -51.7 NC_004629.1 + 5426 0.69 0.974716
Target:  5'- gGCaGCaaCGGCUGUuGCGCCAACUGCc -3'
miRNA:   3'- -UGaUGg-GUCGACGuUGUGGUUGAUGa -5'
17768 5' -51.7 NC_004629.1 + 47714 0.7 0.969109
Target:  5'- --gACCCAuGCUGcCAGCcauGCCAACUugUg -3'
miRNA:   3'- ugaUGGGU-CGAC-GUUG---UGGUUGAugA- -5'
17768 5' -51.7 NC_004629.1 + 197206 0.7 0.965996
Target:  5'- aACcAUCCcGCUG-AGCGCCAACUACg -3'
miRNA:   3'- -UGaUGGGuCGACgUUGUGGUUGAUGa -5'
17768 5' -51.7 NC_004629.1 + 134862 0.7 0.962668
Target:  5'- aGCUAUCCGuGCUGCGGCugCcGgUACa -3'
miRNA:   3'- -UGAUGGGU-CGACGUUGugGuUgAUGa -5'
17768 5' -51.7 NC_004629.1 + 200324 0.72 0.916667
Target:  5'- uACUGCUCGGCaGUAACGCCuGCUGg- -3'
miRNA:   3'- -UGAUGGGUCGaCGUUGUGGuUGAUga -5'
17768 5' -51.7 NC_004629.1 + 40363 0.72 0.900781
Target:  5'- uGCUGCCCGGCaGCAgcuACAUCAaaacccauugcagauGCUACa -3'
miRNA:   3'- -UGAUGGGUCGaCGU---UGUGGU---------------UGAUGa -5'
17768 5' -51.7 NC_004629.1 + 60020 0.8 0.515588
Target:  5'- uGCUGCaCAGCUGCAACACCuaGAUUACg -3'
miRNA:   3'- -UGAUGgGUCGACGUUGUGG--UUGAUGa -5'
17768 5' -51.7 NC_004629.1 + 135148 1.08 0.012422
Target:  5'- aACUACCCAGCUGCAACACCAACUACUg -3'
miRNA:   3'- -UGAUGGGUCGACGUUGUGGUUGAUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.