miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17770 5' -46.8 NC_004629.1 + 47670 0.66 0.999999
Target:  5'- gCCaUGUuaccCAUACcGGUGUaACCAGCg -3'
miRNA:   3'- -GGaACGuuu-GUGUGuCCAUA-UGGUCG- -5'
17770 5' -46.8 NC_004629.1 + 162632 0.66 0.999998
Target:  5'- aUCUUGUc--CACGCGGGUuauccGCCAGa -3'
miRNA:   3'- -GGAACGuuuGUGUGUCCAua---UGGUCg -5'
17770 5' -46.8 NC_004629.1 + 150895 0.66 0.999998
Target:  5'- aCCUUGCGGACcuuCAGGgc--CCuGCg -3'
miRNA:   3'- -GGAACGUUUGuguGUCCauauGGuCG- -5'
17770 5' -46.8 NC_004629.1 + 106100 0.66 0.999998
Target:  5'- aCCaugGCGAugcugauaucuuaACGC-CAGGUAUGCCuGUu -3'
miRNA:   3'- -GGaa-CGUU-------------UGUGuGUCCAUAUGGuCG- -5'
17770 5' -46.8 NC_004629.1 + 168821 0.67 0.999995
Target:  5'- -aUUGC-AAUAUACAGGUuaggugAUACUAGUc -3'
miRNA:   3'- ggAACGuUUGUGUGUCCA------UAUGGUCG- -5'
17770 5' -46.8 NC_004629.1 + 151716 0.67 0.999993
Target:  5'- ---aGUAGAUGCuACuGGUuUACCAGCa -3'
miRNA:   3'- ggaaCGUUUGUG-UGuCCAuAUGGUCG- -5'
17770 5' -46.8 NC_004629.1 + 61591 0.67 0.99999
Target:  5'- cCUUUGCAggU--GCAGGUcgACCAaGUg -3'
miRNA:   3'- -GGAACGUuuGugUGUCCAuaUGGU-CG- -5'
17770 5' -46.8 NC_004629.1 + 151274 0.67 0.999981
Target:  5'- --cUGCGAugAUcuggAUAGGUucACCAGCg -3'
miRNA:   3'- ggaACGUUugUG----UGUCCAuaUGGUCG- -5'
17770 5' -46.8 NC_004629.1 + 191489 0.68 0.999965
Target:  5'- ---aGCGAAuUACGCAGGaauguaaacAUACCGGCg -3'
miRNA:   3'- ggaaCGUUU-GUGUGUCCa--------UAUGGUCG- -5'
17770 5' -46.8 NC_004629.1 + 46445 0.68 0.999954
Target:  5'- ---aGCAuACacuGCACGGGg--ACCGGCa -3'
miRNA:   3'- ggaaCGUuUG---UGUGUCCauaUGGUCG- -5'
17770 5' -46.8 NC_004629.1 + 209961 0.69 0.999919
Target:  5'- uCCUUaCGGgguAUACACGGGaAUAUCAGCc -3'
miRNA:   3'- -GGAAcGUU---UGUGUGUCCaUAUGGUCG- -5'
17770 5' -46.8 NC_004629.1 + 99664 0.69 0.999895
Target:  5'- uCCaugGUAGAUgACACGGGUucaucACCAGCu -3'
miRNA:   3'- -GGaa-CGUUUG-UGUGUCCAua---UGGUCG- -5'
17770 5' -46.8 NC_004629.1 + 39506 0.69 0.999864
Target:  5'- aUCUUGCAuaauCACAGGUGcUACCGa- -3'
miRNA:   3'- -GGAACGUuuguGUGUCCAU-AUGGUcg -5'
17770 5' -46.8 NC_004629.1 + 80921 0.69 0.999825
Target:  5'- gCCgaGCAuuguuuAACugcUAUAGGUGUACCAGUu -3'
miRNA:   3'- -GGaaCGU------UUGu--GUGUCCAUAUGGUCG- -5'
17770 5' -46.8 NC_004629.1 + 121723 0.69 0.999777
Target:  5'- uCCgugGUAAGCAU--GGGUGUAUCAGUc -3'
miRNA:   3'- -GGaa-CGUUUGUGugUCCAUAUGGUCG- -5'
17770 5' -46.8 NC_004629.1 + 110624 0.7 0.999644
Target:  5'- -aUUGUAGAUAgCACAGGUGUgGCUaaGGCa -3'
miRNA:   3'- ggAACGUUUGU-GUGUCCAUA-UGG--UCG- -5'
17770 5' -46.8 NC_004629.1 + 13884 0.72 0.996383
Target:  5'- --aUGCAAAUucaccauCACGGGUAgugauguUACCAGCu -3'
miRNA:   3'- ggaACGUUUGu------GUGUCCAU-------AUGGUCG- -5'
17770 5' -46.8 NC_004629.1 + 109505 0.74 0.987239
Target:  5'- aCUU-CGAACACAUAGaugGUACCAGCc -3'
miRNA:   3'- gGAAcGUUUGUGUGUCca-UAUGGUCG- -5'
17770 5' -46.8 NC_004629.1 + 147998 0.78 0.931792
Target:  5'- aCCUUGUuccaucauACGCugAGGUAUuuuaucACCAGCa -3'
miRNA:   3'- -GGAACGuu------UGUGugUCCAUA------UGGUCG- -5'
17770 5' -46.8 NC_004629.1 + 167763 1.17 0.013605
Target:  5'- aCCUUGCAAACACACAGGUAUACCAGCa -3'
miRNA:   3'- -GGAACGUUUGUGUGUCCAUAUGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.