miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17771 5' -44 NC_004629.1 + 171716 0.66 1
Target:  5'- gGGAGGGCU-UAUGUUGcUUAuaAUUAu -3'
miRNA:   3'- -CCUCCCGAuAUACAGC-AAUuaUAGUu -5'
17771 5' -44 NC_004629.1 + 114386 0.68 1
Target:  5'- aGAGGGau-UAUGUCGUUAAUuuauUUAAc -3'
miRNA:   3'- cCUCCCgauAUACAGCAAUUAu---AGUU- -5'
17771 5' -44 NC_004629.1 + 133226 0.68 1
Target:  5'- gGGAGGGCauUAUGUUGUUuagaaauUAUCc- -3'
miRNA:   3'- -CCUCCCGauAUACAGCAAuu-----AUAGuu -5'
17771 5' -44 NC_004629.1 + 208264 0.67 1
Target:  5'- gGGAGGGCauUAUGUUGUUuuaaccacgcguuAUAUUAAa -3'
miRNA:   3'- -CCUCCCGauAUACAGCAAu------------UAUAGUU- -5'
17771 5' -44 NC_004629.1 + 4017 0.67 1
Target:  5'- gGGAGGG-UGUAUGUCGccaauaAGUGUUAc -3'
miRNA:   3'- -CCUCCCgAUAUACAGCaa----UUAUAGUu -5'
17771 5' -44 NC_004629.1 + 80525 0.67 1
Target:  5'- gGGAGGGUUuuaugAUGUGUCGaaguuuAUAUUAGc -3'
miRNA:   3'- -CCUCCCGA-----UAUACAGCaau---UAUAGUU- -5'
17771 5' -44 NC_004629.1 + 196476 0.66 1
Target:  5'- uGGAuuaauuGGGCU--GUGUCGUcaugcgccucacuaUAAUAUCGAc -3'
miRNA:   3'- -CCU------CCCGAuaUACAGCA--------------AUUAUAGUU- -5'
17771 5' -44 NC_004629.1 + 125933 0.66 1
Target:  5'- cGGAgGGGCUuauuuaugaaugAUGUGUUGUUua-AUCAAa -3'
miRNA:   3'- -CCU-CCCGA------------UAUACAGCAAuuaUAGUU- -5'
17771 5' -44 NC_004629.1 + 23513 0.67 1
Target:  5'- cGGGGaGGCUuUAUGUUGUUAAa----- -3'
miRNA:   3'- -CCUC-CCGAuAUACAGCAAUUauaguu -5'
17771 5' -44 NC_004629.1 + 237291 0.68 1
Target:  5'- gGGAGGGCcAUAUGcUC-UUAuUAUCGAu -3'
miRNA:   3'- -CCUCCCGaUAUAC-AGcAAUuAUAGUU- -5'
17771 5' -44 NC_004629.1 + 132952 0.68 0.999999
Target:  5'- gGGAGGGCU-UAUGaCGUUAAccAUCu- -3'
miRNA:   3'- -CCUCCCGAuAUACaGCAAUUa-UAGuu -5'
17771 5' -44 NC_004629.1 + 44011 0.69 0.999999
Target:  5'- aGGGGGUUAUAUGcCGUUu-UAUUAGa -3'
miRNA:   3'- cCUCCCGAUAUACaGCAAuuAUAGUU- -5'
17771 5' -44 NC_004629.1 + 158070 0.69 0.999998
Target:  5'- aGAGGGCauUAUGUCGUaccaAUCAAu -3'
miRNA:   3'- cCUCCCGauAUACAGCAauuaUAGUU- -5'
17771 5' -44 NC_004629.1 + 120494 0.69 0.999997
Target:  5'- gGGAGGGCUuUAUGUUGUa-------- -3'
miRNA:   3'- -CCUCCCGAuAUACAGCAauuauaguu -5'
17771 5' -44 NC_004629.1 + 114176 0.7 0.999996
Target:  5'- -uAGGGCUAUAUGcCGUUGAg--UAAa -3'
miRNA:   3'- ccUCCCGAUAUACaGCAAUUauaGUU- -5'
17771 5' -44 NC_004629.1 + 207990 0.72 0.999787
Target:  5'- gGGAGGGCU-UAUGcCGUUAAacuuuuacaaguuUAUCAu -3'
miRNA:   3'- -CCUCCCGAuAUACaGCAAUU-------------AUAGUu -5'
17771 5' -44 NC_004629.1 + 115842 0.73 0.999468
Target:  5'- gGGAGaGCUuUAUGUUGUUAAUAUCc- -3'
miRNA:   3'- -CCUCcCGAuAUACAGCAAUUAUAGuu -5'
17771 5' -44 NC_004629.1 + 115461 0.77 0.993208
Target:  5'- aGGAGGGCUuuUAUGUCGUauggcUAAUAUg-- -3'
miRNA:   3'- -CCUCCCGAu-AUACAGCA-----AUUAUAguu -5'
17771 5' -44 NC_004629.1 + 153072 0.78 0.98279
Target:  5'- gGGAGGGCaAUAUGUCGUUuuaAAUAaCAGc -3'
miRNA:   3'- -CCUCCCGaUAUACAGCAA---UUAUaGUU- -5'
17771 5' -44 NC_004629.1 + 12177 0.85 0.831568
Target:  5'- aGGAGGGCUAUAUGUCGUcAAguUUAAg -3'
miRNA:   3'- -CCUCCCGAUAUACAGCAaUUauAGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.