Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17774 | 3' | -43.5 | NC_004629.1 | + | 27603 | 0.69 | 1 |
Target: 5'- uGCGU-GUUuuAACAcuauguaaAUAUAAUGCCCUc -3' miRNA: 3'- -CGCAcCAAuuUUGU--------UGUAUUACGGGA- -5' |
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17774 | 3' | -43.5 | NC_004629.1 | + | 59520 | 0.74 | 0.999378 |
Target: 5'- aCGUGGUUGAAugGACAUugcAUGUUCa -3' miRNA: 3'- cGCACCAAUUUugUUGUAu--UACGGGa -5' |
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17774 | 3' | -43.5 | NC_004629.1 | + | 61673 | 0.67 | 1 |
Target: 5'- aGCG-GGUggAAGGCGAUGUAAUcaucgccuaGCCCUu -3' miRNA: 3'- -CGCaCCAa-UUUUGUUGUAUUA---------CGGGA- -5' |
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17774 | 3' | -43.5 | NC_004629.1 | + | 84841 | 0.86 | 0.820481 |
Target: 5'- aCGUGGUUAugcaauguaaaauACAACAUAAUGCCCUc -3' miRNA: 3'- cGCACCAAUuu-----------UGUUGUAUUACGGGA- -5' |
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17774 | 3' | -43.5 | NC_004629.1 | + | 102319 | 0.66 | 1 |
Target: 5'- -aGUGGUcuau-UAACAcuGUGCCCUg -3' miRNA: 3'- cgCACCAauuuuGUUGUauUACGGGA- -5' |
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17774 | 3' | -43.5 | NC_004629.1 | + | 114073 | 0.68 | 1 |
Target: 5'- cGC-UGGUUAAauaaauuAACGACAUAAU-CCCUc -3' miRNA: 3'- -CGcACCAAUU-------UUGUUGUAUUAcGGGA- -5' |
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17774 | 3' | -43.5 | NC_004629.1 | + | 132914 | 0.73 | 0.999885 |
Target: 5'- --uUGGaUAauuucuAAACAACAUAAUGCCCUc -3' miRNA: 3'- cgcACCaAU------UUUGUUGUAUUACGGGA- -5' |
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17774 | 3' | -43.5 | NC_004629.1 | + | 146918 | 0.66 | 1 |
Target: 5'- aCGUGGaucuuu--ACGUAAUGCCCc -3' miRNA: 3'- cGCACCaauuuuguUGUAUUACGGGa -5' |
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17774 | 3' | -43.5 | NC_004629.1 | + | 147059 | 0.66 | 1 |
Target: 5'- -aGUGGUcagGAAACGACGggcugcaccagGCCCa -3' miRNA: 3'- cgCACCAa--UUUUGUUGUauua-------CGGGa -5' |
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17774 | 3' | -43.5 | NC_004629.1 | + | 152758 | 0.71 | 0.999993 |
Target: 5'- ---aGGUgcuguuauuUAAAACGACAUAuUGCCCUc -3' miRNA: 3'- cgcaCCA---------AUUUUGUUGUAUuACGGGA- -5' |
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17774 | 3' | -43.5 | NC_004629.1 | + | 158371 | 0.74 | 0.999378 |
Target: 5'- --uUGGU----ACGACAUAAUGCCCUc -3' miRNA: 3'- cgcACCAauuuUGUUGUAUUACGGGA- -5' |
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17774 | 3' | -43.5 | NC_004629.1 | + | 167995 | 0.79 | 0.981342 |
Target: 5'- uUGUGGUaguuAAAgAACAUAAUGCCCUc -3' miRNA: 3'- cGCACCAau--UUUgUUGUAUUACGGGA- -5' |
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17774 | 3' | -43.5 | NC_004629.1 | + | 178459 | 0.68 | 1 |
Target: 5'- uGCGUuaaaaaUAAAAaaaaGACAUAAUGCCCUc -3' miRNA: 3'- -CGCAcca---AUUUUg---UUGUAUUACGGGA- -5' |
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17774 | 3' | -43.5 | NC_004629.1 | + | 199504 | 0.67 | 1 |
Target: 5'- aCGUGGcUAAAGCAaccgaGCGUGAgcaCCCUg -3' miRNA: 3'- cGCACCaAUUUUGU-----UGUAUUac-GGGA- -5' |
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17774 | 3' | -43.5 | NC_004629.1 | + | 207955 | 1.12 | 0.057734 |
Target: 5'- cGCGUGGUUAAAACAACAUAAUGCCCUc -3' miRNA: 3'- -CGCACCAAUUUUGUUGUAUUACGGGA- -5' |
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17774 | 3' | -43.5 | NC_004629.1 | + | 215050 | 0.71 | 0.999986 |
Target: 5'- aGCGUGGUUu------CAUGAUGCCUc -3' miRNA: 3'- -CGCACCAAuuuuguuGUAUUACGGGa -5' |
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17774 | 3' | -43.5 | NC_004629.1 | + | 259128 | 0.69 | 1 |
Target: 5'- aUGUGGUUAAA-CAaguACGUuAUGCCUUa -3' miRNA: 3'- cGCACCAAUUUuGU---UGUAuUACGGGA- -5' |
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17774 | 3' | -43.5 | NC_004629.1 | + | 279518 | 0.67 | 1 |
Target: 5'- uCGUGGUUuu-GCAuCAUGuUGCCUa -3' miRNA: 3'- cGCACCAAuuuUGUuGUAUuACGGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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