miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17774 5' -44.5 NC_004629.1 + 173642 0.73 0.999516
Target:  5'- gGGAGGGCUauUGUCGUUAAu------ -3'
miRNA:   3'- -CCUCCCGAauACGGCAAUUugaaaau -5'
17774 5' -44.5 NC_004629.1 + 84885 0.74 0.998001
Target:  5'- gGGAGGGCUUAUGaCCuuaUUGAAUUUg-- -3'
miRNA:   3'- -CCUCCCGAAUAC-GGc--AAUUUGAAaau -5'
17774 5' -44.5 NC_004629.1 + 132952 0.76 0.993653
Target:  5'- gGGAGGGCUUAUGaCGUUAAcCa---- -3'
miRNA:   3'- -CCUCCCGAAUACgGCAAUUuGaaaau -5'
17774 5' -44.5 NC_004629.1 + 115461 0.77 0.985623
Target:  5'- aGGAGGGCUuuUAUGUCGUauGGCUa--- -3'
miRNA:   3'- -CCUCCCGA--AUACGGCAauUUGAaaau -5'
17774 5' -44.5 NC_004629.1 + 143068 0.78 0.979438
Target:  5'- uGGAGGGgaUUUAUGCUGUUAAGCa---- -3'
miRNA:   3'- -CCUCCC--GAAUACGGCAAUUUGaaaau -5'
17774 5' -44.5 NC_004629.1 + 178418 0.78 0.971465
Target:  5'- gGGAGGGCUUAUGCUGUc-AugUUg-- -3'
miRNA:   3'- -CCUCCCGAAUACGGCAauUugAAaau -5'
17774 5' -44.5 NC_004629.1 + 12177 0.79 0.968371
Target:  5'- aGGAGGGCUaUAUGUCGUcaaguuUAAGCUUg-- -3'
miRNA:   3'- -CCUCCCGA-AUACGGCA------AUUUGAAaau -5'
17774 5' -44.5 NC_004629.1 + 158340 0.79 0.968371
Target:  5'- aGAGGGCUUAUGCUGUUAucCa---- -3'
miRNA:   3'- cCUCCCGAAUACGGCAAUuuGaaaau -5'
17774 5' -44.5 NC_004629.1 + 35169 0.8 0.953616
Target:  5'- gGGAGGGCUUAUGCCaUUAAGa----- -3'
miRNA:   3'- -CCUCCCGAAUACGGcAAUUUgaaaau -5'
17774 5' -44.5 NC_004629.1 + 25476 0.87 0.688013
Target:  5'- gGGAGGGCUUAUGCUGUUAAGu----- -3'
miRNA:   3'- -CCUCCCGAAUACGGCAAUUUgaaaau -5'
17774 5' -44.5 NC_004629.1 + 167959 0.91 0.48654
Target:  5'- gGGAGGGCUUAUGCUGUUAAAUa---- -3'
miRNA:   3'- -CCUCCCGAAUACGGCAAUUUGaaaau -5'
17774 5' -44.5 NC_004629.1 + 207990 1.11 0.051901
Target:  5'- gGGAGGGCUUAUGCCGUUAAACUUUUAc -3'
miRNA:   3'- -CCUCCCGAAUACGGCAAUUUGAAAAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.