miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1782 3' -56 NC_001347.2 + 166410 0.66 0.961456
Target:  5'- cCACCGUGCg-GUGaCCCuuggcgUGUCgGCu -3'
miRNA:   3'- aGUGGCACGagCAC-GGGua----GCAGaCG- -5'
1782 3' -56 NC_001347.2 + 199420 0.66 0.950355
Target:  5'- aCGCUGgGCUCGaaGCCCAgaUUGUCgGCc -3'
miRNA:   3'- aGUGGCaCGAGCa-CGGGU--AGCAGaCG- -5'
1782 3' -56 NC_001347.2 + 222425 0.66 0.950355
Target:  5'- gUCGCCGcGuCUCGUucgucgagGCCgAUCGaCUGCc -3'
miRNA:   3'- -AGUGGCaC-GAGCA--------CGGgUAGCaGACG- -5'
1782 3' -56 NC_001347.2 + 86199 0.67 0.941875
Target:  5'- gUCGuCCGaGCcgcCGUGCCgGUCGUC-GCa -3'
miRNA:   3'- -AGU-GGCaCGa--GCACGGgUAGCAGaCG- -5'
1782 3' -56 NC_001347.2 + 1871 0.67 0.937304
Target:  5'- -gGCCGUGCgUCG-GCaCCugaaccagCGUCUGUg -3'
miRNA:   3'- agUGGCACG-AGCaCG-GGua------GCAGACG- -5'
1782 3' -56 NC_001347.2 + 39132 0.67 0.932508
Target:  5'- -gGCCGUccgaGCggcagcagCGUGCCCgcGUCGcgCUGCg -3'
miRNA:   3'- agUGGCA----CGa-------GCACGGG--UAGCa-GACG- -5'
1782 3' -56 NC_001347.2 + 63123 0.67 0.927489
Target:  5'- cCGCCGcUGUggccggaGUGCCCGUCG-CcGCa -3'
miRNA:   3'- aGUGGC-ACGag-----CACGGGUAGCaGaCG- -5'
1782 3' -56 NC_001347.2 + 733 0.68 0.916775
Target:  5'- gCGCCGUGCacgUCGcUGCCUAUaaaaGccagCUGCg -3'
miRNA:   3'- aGUGGCACG---AGC-ACGGGUAg---Ca---GACG- -5'
1782 3' -56 NC_001347.2 + 196609 0.68 0.916775
Target:  5'- aCGCCGUGCUg--GCCCugcguaucauUCGgcugCUGCg -3'
miRNA:   3'- aGUGGCACGAgcaCGGGu---------AGCa---GACG- -5'
1782 3' -56 NC_001347.2 + 112439 0.68 0.911082
Target:  5'- -gGCCGUGCUCG-GCC--UCGcCUGg -3'
miRNA:   3'- agUGGCACGAGCaCGGguAGCaGACg -5'
1782 3' -56 NC_001347.2 + 65372 0.68 0.892679
Target:  5'- gCGCCGUGCgUC-UGCCCGUgagcacCG-CUGCc -3'
miRNA:   3'- aGUGGCACG-AGcACGGGUA------GCaGACG- -5'
1782 3' -56 NC_001347.2 + 171538 0.68 0.886112
Target:  5'- cCGCCGUGCUUGaGuCCCGauauggCGUCgUGCc -3'
miRNA:   3'- aGUGGCACGAGCaC-GGGUa-----GCAG-ACG- -5'
1782 3' -56 NC_001347.2 + 113450 0.7 0.809656
Target:  5'- cCACUGUGCaCGUaGCCCGUCacgGUCgGCc -3'
miRNA:   3'- aGUGGCACGaGCA-CGGGUAG---CAGaCG- -5'
1782 3' -56 NC_001347.2 + 38636 0.7 0.801065
Target:  5'- cCAUCGgcUGCagUCGccUGCCCggCGUCUGCa -3'
miRNA:   3'- aGUGGC--ACG--AGC--ACGGGuaGCAGACG- -5'
1782 3' -56 NC_001347.2 + 91496 0.7 0.801065
Target:  5'- cCACCGUGUUCcugGUGCCgCGaCGUCacgGCa -3'
miRNA:   3'- aGUGGCACGAG---CACGG-GUaGCAGa--CG- -5'
1782 3' -56 NC_001347.2 + 110199 0.71 0.787023
Target:  5'- aUCACCaacguggaaggcgGCUCGcuggaaGCCgGUCGUCUGCg -3'
miRNA:   3'- -AGUGGca-----------CGAGCa-----CGGgUAGCAGACG- -5'
1782 3' -56 NC_001347.2 + 21484 0.71 0.783459
Target:  5'- cUCAUCucaGCcucgUCGUGCCCGUCGgCUGCc -3'
miRNA:   3'- -AGUGGca-CG----AGCACGGGUAGCaGACG- -5'
1782 3' -56 NC_001347.2 + 119566 0.71 0.74678
Target:  5'- cCACCGUGCcaccGCCCAUUGaUCUGUc -3'
miRNA:   3'- aGUGGCACGagcaCGGGUAGC-AGACG- -5'
1782 3' -56 NC_001347.2 + 162032 0.72 0.70859
Target:  5'- gCGCCGUGCUCagcUGCUCGUCGcgUUGUc -3'
miRNA:   3'- aGUGGCACGAGc--ACGGGUAGCa-GACG- -5'
1782 3' -56 NC_001347.2 + 128528 0.73 0.63972
Target:  5'- -gACCGUGCagGUGUUCAUCGacCUGCg -3'
miRNA:   3'- agUGGCACGagCACGGGUAGCa-GACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.