Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1782 | 3' | -56 | NC_001347.2 | + | 158330 | 0.75 | 0.560771 |
Target: 5'- aCGCCGaGCUCGUGCaCUGcUCGcUCUGCg -3' miRNA: 3'- aGUGGCaCGAGCACG-GGU-AGC-AGACG- -5' |
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1782 | 3' | -56 | NC_001347.2 | + | 113450 | 0.7 | 0.809656 |
Target: 5'- cCACUGUGCaCGUaGCCCGUCacgGUCgGCc -3' miRNA: 3'- aGUGGCACGaGCA-CGGGUAG---CAGaCG- -5' |
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1782 | 3' | -56 | NC_001347.2 | + | 38636 | 0.7 | 0.801065 |
Target: 5'- cCAUCGgcUGCagUCGccUGCCCggCGUCUGCa -3' miRNA: 3'- aGUGGC--ACG--AGC--ACGGGuaGCAGACG- -5' |
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1782 | 3' | -56 | NC_001347.2 | + | 91496 | 0.7 | 0.801065 |
Target: 5'- cCACCGUGUUCcugGUGCCgCGaCGUCacgGCa -3' miRNA: 3'- aGUGGCACGAG---CACGG-GUaGCAGa--CG- -5' |
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1782 | 3' | -56 | NC_001347.2 | + | 110199 | 0.71 | 0.787023 |
Target: 5'- aUCACCaacguggaaggcgGCUCGcuggaaGCCgGUCGUCUGCg -3' miRNA: 3'- -AGUGGca-----------CGAGCa-----CGGgUAGCAGACG- -5' |
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1782 | 3' | -56 | NC_001347.2 | + | 21484 | 0.71 | 0.783459 |
Target: 5'- cUCAUCucaGCcucgUCGUGCCCGUCGgCUGCc -3' miRNA: 3'- -AGUGGca-CG----AGCACGGGUAGCaGACG- -5' |
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1782 | 3' | -56 | NC_001347.2 | + | 162032 | 0.72 | 0.70859 |
Target: 5'- gCGCCGUGCUCagcUGCUCGUCGcgUUGUc -3' miRNA: 3'- aGUGGCACGAGc--ACGGGUAGCa-GACG- -5' |
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1782 | 3' | -56 | NC_001347.2 | + | 119566 | 0.71 | 0.74678 |
Target: 5'- cCACCGUGCcaccGCCCAUUGaUCUGUc -3' miRNA: 3'- aGUGGCACGagcaCGGGUAGC-AGACG- -5' |
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1782 | 3' | -56 | NC_001347.2 | + | 20664 | 1.13 | 0.002773 |
Target: 5'- cUCACCGUGCUCGUGCCCAUCGUCUGCa -3' miRNA: 3'- -AGUGGCACGAGCACGGGUAGCAGACG- -5' |
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1782 | 3' | -56 | NC_001347.2 | + | 65372 | 0.68 | 0.892679 |
Target: 5'- gCGCCGUGCgUC-UGCCCGUgagcacCG-CUGCc -3' miRNA: 3'- aGUGGCACG-AGcACGGGUA------GCaGACG- -5' |
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1782 | 3' | -56 | NC_001347.2 | + | 171538 | 0.68 | 0.886112 |
Target: 5'- cCGCCGUGCUUGaGuCCCGauauggCGUCgUGCc -3' miRNA: 3'- aGUGGCACGAGCaC-GGGUa-----GCAG-ACG- -5' |
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1782 | 3' | -56 | NC_001347.2 | + | 112439 | 0.68 | 0.911082 |
Target: 5'- -gGCCGUGCUCG-GCC--UCGcCUGg -3' miRNA: 3'- agUGGCACGAGCaCGGguAGCaGACg -5' |
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1782 | 3' | -56 | NC_001347.2 | + | 86199 | 0.67 | 0.941875 |
Target: 5'- gUCGuCCGaGCcgcCGUGCCgGUCGUC-GCa -3' miRNA: 3'- -AGU-GGCaCGa--GCACGGgUAGCAGaCG- -5' |
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1782 | 3' | -56 | NC_001347.2 | + | 199420 | 0.66 | 0.950355 |
Target: 5'- aCGCUGgGCUCGaaGCCCAgaUUGUCgGCc -3' miRNA: 3'- aGUGGCaCGAGCa-CGGGU--AGCAGaCG- -5' |
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1782 | 3' | -56 | NC_001347.2 | + | 222425 | 0.66 | 0.950355 |
Target: 5'- gUCGCCGcGuCUCGUucgucgagGCCgAUCGaCUGCc -3' miRNA: 3'- -AGUGGCaC-GAGCA--------CGGgUAGCaGACG- -5' |
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1782 | 3' | -56 | NC_001347.2 | + | 1871 | 0.67 | 0.937304 |
Target: 5'- -gGCCGUGCgUCG-GCaCCugaaccagCGUCUGUg -3' miRNA: 3'- agUGGCACG-AGCaCG-GGua------GCAGACG- -5' |
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1782 | 3' | -56 | NC_001347.2 | + | 196609 | 0.68 | 0.916775 |
Target: 5'- aCGCCGUGCUg--GCCCugcguaucauUCGgcugCUGCg -3' miRNA: 3'- aGUGGCACGAgcaCGGGu---------AGCa---GACG- -5' |
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1782 | 3' | -56 | NC_001347.2 | + | 63123 | 0.67 | 0.927489 |
Target: 5'- cCGCCGcUGUggccggaGUGCCCGUCG-CcGCa -3' miRNA: 3'- aGUGGC-ACGag-----CACGGGUAGCaGaCG- -5' |
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1782 | 3' | -56 | NC_001347.2 | + | 39132 | 0.67 | 0.932508 |
Target: 5'- -gGCCGUccgaGCggcagcagCGUGCCCgcGUCGcgCUGCg -3' miRNA: 3'- agUGGCA----CGa-------GCACGGG--UAGCa-GACG- -5' |
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1782 | 3' | -56 | NC_001347.2 | + | 733 | 0.68 | 0.916775 |
Target: 5'- gCGCCGUGCacgUCGcUGCCUAUaaaaGccagCUGCg -3' miRNA: 3'- aGUGGCACG---AGC-ACGGGUAg---Ca---GACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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