miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1782 5' -51.2 NC_001347.2 + 210089 0.66 0.998913
Target:  5'- aGCGUAuuCGCGUcaGGaGCAGCGAgu-CCCg -3'
miRNA:   3'- -UGCAU--GUGCAa-CC-CGUUGCUuguGGG- -5'
1782 5' -51.2 NC_001347.2 + 5141 0.66 0.998913
Target:  5'- cCGcACGCGUUuGGCAuGCGGGCGguauCCCa -3'
miRNA:   3'- uGCaUGUGCAAcCCGU-UGCUUGU----GGG- -5'
1782 5' -51.2 NC_001347.2 + 165970 0.66 0.998913
Target:  5'- cGCGgcCAgGUgugcGGGUucguAGCGcGCACCCa -3'
miRNA:   3'- -UGCauGUgCAa---CCCG----UUGCuUGUGGG- -5'
1782 5' -51.2 NC_001347.2 + 201424 0.66 0.998783
Target:  5'- gACGU-CGCGaccguggaaacccGGGCAACGcGugGCCCu -3'
miRNA:   3'- -UGCAuGUGCaa-----------CCCGUUGC-UugUGGG- -5'
1782 5' -51.2 NC_001347.2 + 93189 0.66 0.998689
Target:  5'- --cUGCGguUUGGGCGcCGAGCGCUCg -3'
miRNA:   3'- ugcAUGUgcAACCCGUuGCUUGUGGG- -5'
1782 5' -51.2 NC_001347.2 + 77786 0.66 0.998689
Target:  5'- uUGUACGCGcgGccguGCAGCGGgccaccgagacACACCCg -3'
miRNA:   3'- uGCAUGUGCaaCc---CGUUGCU-----------UGUGGG- -5'
1782 5' -51.2 NC_001347.2 + 65815 0.66 0.998538
Target:  5'- -gGUGCGCGUggugaucgUGGGCcaggacccguacugcGACGGcaGCGCCa -3'
miRNA:   3'- ugCAUGUGCA--------ACCCG---------------UUGCU--UGUGGg -5'
1782 5' -51.2 NC_001347.2 + 89528 0.66 0.998428
Target:  5'- -gGUGCGCGacGaGGCcggccaGGCGGGCACCUc -3'
miRNA:   3'- ugCAUGUGCaaC-CCG------UUGCUUGUGGG- -5'
1782 5' -51.2 NC_001347.2 + 13543 0.66 0.998428
Target:  5'- cCGUGCugGa-GGGCcGCcccACGCCCa -3'
miRNA:   3'- uGCAUGugCaaCCCGuUGcu-UGUGGG- -5'
1782 5' -51.2 NC_001347.2 + 153270 0.66 0.998428
Target:  5'- cCGUGguUGUUGGcCGACGuAGCGCCg -3'
miRNA:   3'- uGCAUguGCAACCcGUUGC-UUGUGGg -5'
1782 5' -51.2 NC_001347.2 + 181057 0.66 0.998428
Target:  5'- uCGUcCGCGc-GGGCGGC-AGCAUCCa -3'
miRNA:   3'- uGCAuGUGCaaCCCGUUGcUUGUGGG- -5'
1782 5' -51.2 NC_001347.2 + 117889 0.66 0.998428
Target:  5'- cACGUcAgACGggGcGGCGGCGggU-CCCg -3'
miRNA:   3'- -UGCA-UgUGCaaC-CCGUUGCuuGuGGG- -5'
1782 5' -51.2 NC_001347.2 + 17474 0.66 0.9984
Target:  5'- aGCGUugGCaccUGGGuCAGCGuauuguuAACGCCUa -3'
miRNA:   3'- -UGCAugUGca-ACCC-GUUGC-------UUGUGGG- -5'
1782 5' -51.2 NC_001347.2 + 94113 0.66 0.998252
Target:  5'- aGCGUcuGCGCGccugagagccgauuaUcgGGGCAGCGcAgACCCa -3'
miRNA:   3'- -UGCA--UGUGC---------------Aa-CCCGUUGCuUgUGGG- -5'
1782 5' -51.2 NC_001347.2 + 78676 0.66 0.998125
Target:  5'- cCGUGCGCaagGcGcGCGACGcGGCGCCCu -3'
miRNA:   3'- uGCAUGUGcaaC-C-CGUUGC-UUGUGGG- -5'
1782 5' -51.2 NC_001347.2 + 75441 0.66 0.998125
Target:  5'- aGCGaacuCACGUcGGGCAgcucaACGcGCGCCa -3'
miRNA:   3'- -UGCau--GUGCAaCCCGU-----UGCuUGUGGg -5'
1782 5' -51.2 NC_001347.2 + 73695 0.66 0.998125
Target:  5'- cGCGcACGCGagaagGGGCcgggguccGCGGGCACCg -3'
miRNA:   3'- -UGCaUGUGCaa---CCCGu-------UGCUUGUGGg -5'
1782 5' -51.2 NC_001347.2 + 187054 0.66 0.998125
Target:  5'- cGCGgGCGCaGUccgGGGCGACG-ACGCUUc -3'
miRNA:   3'- -UGCaUGUG-CAa--CCCGUUGCuUGUGGG- -5'
1782 5' -51.2 NC_001347.2 + 144947 0.66 0.99792
Target:  5'- -gGUGgACG-UGGGUgaucaguucaccuacGAUGAGCACCUg -3'
miRNA:   3'- ugCAUgUGCaACCCG---------------UUGCUUGUGGG- -5'
1782 5' -51.2 NC_001347.2 + 194045 0.66 0.997773
Target:  5'- uCGUGCGCGUgGGGCuGGCGcu-GCUCa -3'
miRNA:   3'- uGCAUGUGCAaCCCG-UUGCuugUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.