Results 1 - 20 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1782 | 5' | -51.2 | NC_001347.2 | + | 194045 | 0.66 | 0.997773 |
Target: 5'- uCGUGCGCGUgGGGCuGGCGcu-GCUCa -3' miRNA: 3'- uGCAUGUGCAaCCCG-UUGCuugUGGG- -5' |
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1782 | 5' | -51.2 | NC_001347.2 | + | 17474 | 0.66 | 0.9984 |
Target: 5'- aGCGUugGCaccUGGGuCAGCGuauuguuAACGCCUa -3' miRNA: 3'- -UGCAugUGca-ACCC-GUUGC-------UUGUGGG- -5' |
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1782 | 5' | -51.2 | NC_001347.2 | + | 187054 | 0.66 | 0.998125 |
Target: 5'- cGCGgGCGCaGUccgGGGCGACG-ACGCUUc -3' miRNA: 3'- -UGCaUGUG-CAa--CCCGUUGCuUGUGGG- -5' |
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1782 | 5' | -51.2 | NC_001347.2 | + | 94113 | 0.66 | 0.998252 |
Target: 5'- aGCGUcuGCGCGccugagagccgauuaUcgGGGCAGCGcAgACCCa -3' miRNA: 3'- -UGCA--UGUGC---------------Aa-CCCGUUGCuUgUGGG- -5' |
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1782 | 5' | -51.2 | NC_001347.2 | + | 73695 | 0.66 | 0.998125 |
Target: 5'- cGCGcACGCGagaagGGGCcgggguccGCGGGCACCg -3' miRNA: 3'- -UGCaUGUGCaa---CCCGu-------UGCUUGUGGg -5' |
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1782 | 5' | -51.2 | NC_001347.2 | + | 75441 | 0.66 | 0.998125 |
Target: 5'- aGCGaacuCACGUcGGGCAgcucaACGcGCGCCa -3' miRNA: 3'- -UGCau--GUGCAaCCCGU-----UGCuUGUGGg -5' |
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1782 | 5' | -51.2 | NC_001347.2 | + | 78676 | 0.66 | 0.998125 |
Target: 5'- cCGUGCGCaagGcGcGCGACGcGGCGCCCu -3' miRNA: 3'- uGCAUGUGcaaC-C-CGUUGC-UUGUGGG- -5' |
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1782 | 5' | -51.2 | NC_001347.2 | + | 144947 | 0.66 | 0.99792 |
Target: 5'- -gGUGgACG-UGGGUgaucaguucaccuacGAUGAGCACCUg -3' miRNA: 3'- ugCAUgUGCaACCCG---------------UUGCUUGUGGG- -5' |
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1782 | 5' | -51.2 | NC_001347.2 | + | 168132 | 0.66 | 0.997773 |
Target: 5'- ---aACACGUaGGGCAugaGCGuGCagGCCCa -3' miRNA: 3'- ugcaUGUGCAaCCCGU---UGCuUG--UGGG- -5' |
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1782 | 5' | -51.2 | NC_001347.2 | + | 89528 | 0.66 | 0.998428 |
Target: 5'- -gGUGCGCGacGaGGCcggccaGGCGGGCACCUc -3' miRNA: 3'- ugCAUGUGCaaC-CCG------UUGCUUGUGGG- -5' |
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1782 | 5' | -51.2 | NC_001347.2 | + | 13543 | 0.66 | 0.998428 |
Target: 5'- cCGUGCugGa-GGGCcGCcccACGCCCa -3' miRNA: 3'- uGCAUGugCaaCCCGuUGcu-UGUGGG- -5' |
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1782 | 5' | -51.2 | NC_001347.2 | + | 153270 | 0.66 | 0.998428 |
Target: 5'- cCGUGguUGUUGGcCGACGuAGCGCCg -3' miRNA: 3'- uGCAUguGCAACCcGUUGC-UUGUGGg -5' |
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1782 | 5' | -51.2 | NC_001347.2 | + | 5141 | 0.66 | 0.998913 |
Target: 5'- cCGcACGCGUUuGGCAuGCGGGCGguauCCCa -3' miRNA: 3'- uGCaUGUGCAAcCCGU-UGCUUGU----GGG- -5' |
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1782 | 5' | -51.2 | NC_001347.2 | + | 165970 | 0.66 | 0.998913 |
Target: 5'- cGCGgcCAgGUgugcGGGUucguAGCGcGCACCCa -3' miRNA: 3'- -UGCauGUgCAa---CCCG----UUGCuUGUGGG- -5' |
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1782 | 5' | -51.2 | NC_001347.2 | + | 93189 | 0.66 | 0.998689 |
Target: 5'- --cUGCGguUUGGGCGcCGAGCGCUCg -3' miRNA: 3'- ugcAUGUgcAACCCGUuGCUUGUGGG- -5' |
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1782 | 5' | -51.2 | NC_001347.2 | + | 201424 | 0.66 | 0.998783 |
Target: 5'- gACGU-CGCGaccguggaaacccGGGCAACGcGugGCCCu -3' miRNA: 3'- -UGCAuGUGCaa-----------CCCGUUGC-UugUGGG- -5' |
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1782 | 5' | -51.2 | NC_001347.2 | + | 77786 | 0.66 | 0.998689 |
Target: 5'- uUGUACGCGcgGccguGCAGCGGgccaccgagacACACCCg -3' miRNA: 3'- uGCAUGUGCaaCc---CGUUGCU-----------UGUGGG- -5' |
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1782 | 5' | -51.2 | NC_001347.2 | + | 65815 | 0.66 | 0.998538 |
Target: 5'- -gGUGCGCGUggugaucgUGGGCcaggacccguacugcGACGGcaGCGCCa -3' miRNA: 3'- ugCAUGUGCA--------ACCCG---------------UUGCU--UGUGGg -5' |
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1782 | 5' | -51.2 | NC_001347.2 | + | 117889 | 0.66 | 0.998428 |
Target: 5'- cACGUcAgACGggGcGGCGGCGggU-CCCg -3' miRNA: 3'- -UGCA-UgUGCaaC-CCGUUGCuuGuGGG- -5' |
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1782 | 5' | -51.2 | NC_001347.2 | + | 181057 | 0.66 | 0.998428 |
Target: 5'- uCGUcCGCGc-GGGCGGC-AGCAUCCa -3' miRNA: 3'- uGCAuGUGCaaCCCGUUGcUUGUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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