miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1782 5' -51.2 NC_001347.2 + 20699 1.12 0.008977
Target:  5'- cACGUACACGUUGGGCAACGAACACCCu -3'
miRNA:   3'- -UGCAUGUGCAACCCGUUGCUUGUGGG- -5'
1782 5' -51.2 NC_001347.2 + 15853 0.83 0.457192
Target:  5'- gGCGUACACGUUGGGaaGACGgAGCuCCCa -3'
miRNA:   3'- -UGCAUGUGCAACCCg-UUGC-UUGuGGG- -5'
1782 5' -51.2 NC_001347.2 + 124532 0.79 0.614148
Target:  5'- ---cACGCGUUGcuGCAACGGACACCCu -3'
miRNA:   3'- ugcaUGUGCAACc-CGUUGCUUGUGGG- -5'
1782 5' -51.2 NC_001347.2 + 109542 0.78 0.695441
Target:  5'- gGCGUGCACGUcGGGCGuuaugacacGCGGcCGCCUu -3'
miRNA:   3'- -UGCAUGUGCAaCCCGU---------UGCUuGUGGG- -5'
1782 5' -51.2 NC_001347.2 + 136198 0.78 0.705457
Target:  5'- cGCGgacUGCGcCGggGGGCGGCGGGCACgCCg -3'
miRNA:   3'- -UGC---AUGU-GCaaCCCGUUGCUUGUG-GG- -5'
1782 5' -51.2 NC_001347.2 + 43662 0.77 0.735097
Target:  5'- cGCGacagGCGCGUcgaggGGGCAG-GAACACCCu -3'
miRNA:   3'- -UGCa---UGUGCAa----CCCGUUgCUUGUGGG- -5'
1782 5' -51.2 NC_001347.2 + 144431 0.74 0.850408
Target:  5'- gACGUccgcugccagaugGCACGggGGGCGACG-GC-CCCg -3'
miRNA:   3'- -UGCA-------------UGUGCaaCCCGUUGCuUGuGGG- -5'
1782 5' -51.2 NC_001347.2 + 103215 0.73 0.919064
Target:  5'- gACGUAcCGCGuUUGGGCGccAUGGAUGCCg -3'
miRNA:   3'- -UGCAU-GUGC-AACCCGU--UGCUUGUGGg -5'
1782 5' -51.2 NC_001347.2 + 16394 0.72 0.93974
Target:  5'- gACGccgACGCGUUGGccgccuGCGuugGCGAACACCa -3'
miRNA:   3'- -UGCa--UGUGCAACC------CGU---UGCUUGUGGg -5'
1782 5' -51.2 NC_001347.2 + 53040 0.72 0.944317
Target:  5'- cUGUGCGCGguuUGGGCAACGccCugUCu -3'
miRNA:   3'- uGCAUGUGCa--ACCCGUUGCuuGugGG- -5'
1782 5' -51.2 NC_001347.2 + 178080 0.72 0.944317
Target:  5'- gGCGUcgGCGUUGGGCAAgGuGGCGCUUc -3'
miRNA:   3'- -UGCAugUGCAACCCGUUgC-UUGUGGG- -5'
1782 5' -51.2 NC_001347.2 + 183824 0.71 0.948661
Target:  5'- cGCGUAUACGgggcUGGGCAcgccaaaguUGAGCAgCCCc -3'
miRNA:   3'- -UGCAUGUGCa---ACCCGUu--------GCUUGU-GGG- -5'
1782 5' -51.2 NC_001347.2 + 201628 0.71 0.95666
Target:  5'- aACGUGC-CGUcugaacuguaccUGGGCGccuCGGGCGCCa -3'
miRNA:   3'- -UGCAUGuGCA------------ACCCGUu--GCUUGUGGg -5'
1782 5' -51.2 NC_001347.2 + 39537 0.71 0.960322
Target:  5'- cCGUugcGCugGgccaUGGGCGcCGGACACCUc -3'
miRNA:   3'- uGCA---UGugCa---ACCCGUuGCUUGUGGG- -5'
1782 5' -51.2 NC_001347.2 + 93456 0.7 0.966993
Target:  5'- cACGUACuCGac-GGCGAUGcGCGCCCg -3'
miRNA:   3'- -UGCAUGuGCaacCCGUUGCuUGUGGG- -5'
1782 5' -51.2 NC_001347.2 + 61338 0.7 0.970012
Target:  5'- uCGUAguUGCGcucUUGGGCGACauGCACCCg -3'
miRNA:   3'- uGCAU--GUGC---AACCCGUUGcuUGUGGG- -5'
1782 5' -51.2 NC_001347.2 + 78190 0.7 0.975449
Target:  5'- ---aGCACGaccgGGGCAGCG-ACGCCa -3'
miRNA:   3'- ugcaUGUGCaa--CCCGUUGCuUGUGGg -5'
1782 5' -51.2 NC_001347.2 + 141221 0.7 0.97788
Target:  5'- cUGUACGCGcaGGGC-ACGuACGCCg -3'
miRNA:   3'- uGCAUGUGCaaCCCGuUGCuUGUGGg -5'
1782 5' -51.2 NC_001347.2 + 187959 0.69 0.980128
Target:  5'- gGCGcACACGUuuuUGGGCGcGCGcuCGCCg -3'
miRNA:   3'- -UGCaUGUGCA---ACCCGU-UGCuuGUGGg -5'
1782 5' -51.2 NC_001347.2 + 150780 0.69 0.982202
Target:  5'- --cUGCugGUgccGGGUGGCGAGUACCCu -3'
miRNA:   3'- ugcAUGugCAa--CCCGUUGCUUGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.