miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1782 5' -51.2 NC_001347.2 + 194045 0.66 0.997773
Target:  5'- uCGUGCGCGUgGGGCuGGCGcu-GCUCa -3'
miRNA:   3'- uGCAUGUGCAaCCCG-UUGCuugUGGG- -5'
1782 5' -51.2 NC_001347.2 + 168132 0.66 0.997773
Target:  5'- ---aACACGUaGGGCAugaGCGuGCagGCCCa -3'
miRNA:   3'- ugcaUGUGCAaCCCGU---UGCuUG--UGGG- -5'
1782 5' -51.2 NC_001347.2 + 145361 0.66 0.997369
Target:  5'- cGCGUGC-C--UGcGCGACGAacuGCACCCg -3'
miRNA:   3'- -UGCAUGuGcaACcCGUUGCU---UGUGGG- -5'
1782 5' -51.2 NC_001347.2 + 16865 0.66 0.997369
Target:  5'- uGCGUACACa-UGGGCGAgGcGGCGCg- -3'
miRNA:   3'- -UGCAUGUGcaACCCGUUgC-UUGUGgg -5'
1782 5' -51.2 NC_001347.2 + 107613 0.67 0.996904
Target:  5'- cCGUACugGUga-GCGACGAgaacgGCGCCa -3'
miRNA:   3'- uGCAUGugCAaccCGUUGCU-----UGUGGg -5'
1782 5' -51.2 NC_001347.2 + 8817 0.67 0.996904
Target:  5'- uUGUGCcCGgaccgUGGGCGcgACGAA-ACCCa -3'
miRNA:   3'- uGCAUGuGCa----ACCCGU--UGCUUgUGGG- -5'
1782 5' -51.2 NC_001347.2 + 147887 0.67 0.996752
Target:  5'- cCGUugGCGUagccauuggggccgUGGGUGgcGCGGugGCCUc -3'
miRNA:   3'- uGCAugUGCA--------------ACCCGU--UGCUugUGGG- -5'
1782 5' -51.2 NC_001347.2 + 59820 0.67 0.996374
Target:  5'- gGCcUACGcCGUgGGGCAGuuUGAGCAgCCCa -3'
miRNA:   3'- -UGcAUGU-GCAaCCCGUU--GCUUGU-GGG- -5'
1782 5' -51.2 NC_001347.2 + 19892 0.67 0.996374
Target:  5'- gACGUACACGUUGcuuacCAGCGuGGCugUCa -3'
miRNA:   3'- -UGCAUGUGCAACcc---GUUGC-UUGugGG- -5'
1782 5' -51.2 NC_001347.2 + 176639 0.67 0.996201
Target:  5'- -gGUGCACGgcGcGGCGuaaACGAAagcgcuuuugggcuCACCCa -3'
miRNA:   3'- ugCAUGUGCaaC-CCGU---UGCUU--------------GUGGG- -5'
1782 5' -51.2 NC_001347.2 + 166267 0.67 0.995576
Target:  5'- uACGUcaaagacggcuagcGCGCGUUGcaccgcGGUAACGAcgGCGCCa -3'
miRNA:   3'- -UGCA--------------UGUGCAAC------CCGUUGCU--UGUGGg -5'
1782 5' -51.2 NC_001347.2 + 139240 0.67 0.994321
Target:  5'- gACGUGCAUc---GGCuguGCGAggACGCCCg -3'
miRNA:   3'- -UGCAUGUGcaacCCGu--UGCU--UGUGGG- -5'
1782 5' -51.2 NC_001347.2 + 142588 0.67 0.994321
Target:  5'- aGCGgGgGCGgcggGGGCAGCGGguuAUugCCg -3'
miRNA:   3'- -UGCaUgUGCaa--CCCGUUGCU---UGugGG- -5'
1782 5' -51.2 NC_001347.2 + 38014 0.68 0.993458
Target:  5'- ---cGCGCGgccucGGCGGCGGGCGCCg -3'
miRNA:   3'- ugcaUGUGCaac--CCGUUGCUUGUGGg -5'
1782 5' -51.2 NC_001347.2 + 140691 0.68 0.993458
Target:  5'- gGCGgucGCAUGUUGGGCGcuaGCGuggccgUACCUa -3'
miRNA:   3'- -UGCa--UGUGCAACCCGU---UGCuu----GUGGG- -5'
1782 5' -51.2 NC_001347.2 + 38770 0.68 0.993458
Target:  5'- aGCGUcGCGCGc-GGGguGCccACGCCCa -3'
miRNA:   3'- -UGCA-UGUGCaaCCCguUGcuUGUGGG- -5'
1782 5' -51.2 NC_001347.2 + 156932 0.68 0.99318
Target:  5'- aGCGgACugguuauCGUUGGGCAccgucaucguggugGCGAGCGCgCu -3'
miRNA:   3'- -UGCaUGu------GCAACCCGU--------------UGCUUGUGgG- -5'
1782 5' -51.2 NC_001347.2 + 139370 0.68 0.992493
Target:  5'- cUGUGCACGUgguggUGGGCAACG---GCUUg -3'
miRNA:   3'- uGCAUGUGCA-----ACCCGUUGCuugUGGG- -5'
1782 5' -51.2 NC_001347.2 + 7825 0.68 0.992493
Target:  5'- gGCGUgacgaaGCugGUacgGuGGCGGCGGACugUCa -3'
miRNA:   3'- -UGCA------UGugCAa--C-CCGUUGCUUGugGG- -5'
1782 5' -51.2 NC_001347.2 + 133481 0.68 0.991418
Target:  5'- cCGgcUACGUcccaguccgGGGCuuaGAGCACCCa -3'
miRNA:   3'- uGCauGUGCAa--------CCCGuugCUUGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.