miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1782 5' -51.2 NC_001347.2 + 766 0.66 0.997773
Target:  5'- uGCGUGucgccCGCGgcacacGGGCGACGAagGCGUCCg -3'
miRNA:   3'- -UGCAU-----GUGCaa----CCCGUUGCU--UGUGGG- -5'
1782 5' -51.2 NC_001347.2 + 2351 0.69 0.988051
Target:  5'- cGCGcGgGCGUgcUGGGCGcgcuggcgcugggacGCGAgucgGCGCCCg -3'
miRNA:   3'- -UGCaUgUGCA--ACCCGU---------------UGCU----UGUGGG- -5'
1782 5' -51.2 NC_001347.2 + 5141 0.66 0.998913
Target:  5'- cCGcACGCGUUuGGCAuGCGGGCGguauCCCa -3'
miRNA:   3'- uGCaUGUGCAAcCCGU-UGCUUGU----GGG- -5'
1782 5' -51.2 NC_001347.2 + 7825 0.68 0.992493
Target:  5'- gGCGUgacgaaGCugGUacgGuGGCGGCGGACugUCa -3'
miRNA:   3'- -UGCA------UGugCAa--C-CCGUUGCUUGugGG- -5'
1782 5' -51.2 NC_001347.2 + 8817 0.67 0.996904
Target:  5'- uUGUGCcCGgaccgUGGGCGcgACGAA-ACCCa -3'
miRNA:   3'- uGCAUGuGCa----ACCCGU--UGCUUgUGGG- -5'
1782 5' -51.2 NC_001347.2 + 13543 0.66 0.998428
Target:  5'- cCGUGCugGa-GGGCcGCcccACGCCCa -3'
miRNA:   3'- uGCAUGugCaaCCCGuUGcu-UGUGGG- -5'
1782 5' -51.2 NC_001347.2 + 15853 0.83 0.457192
Target:  5'- gGCGUACACGUUGGGaaGACGgAGCuCCCa -3'
miRNA:   3'- -UGCAUGUGCAACCCg-UUGC-UUGuGGG- -5'
1782 5' -51.2 NC_001347.2 + 16394 0.72 0.93974
Target:  5'- gACGccgACGCGUUGGccgccuGCGuugGCGAACACCa -3'
miRNA:   3'- -UGCa--UGUGCAACC------CGU---UGCUUGUGGg -5'
1782 5' -51.2 NC_001347.2 + 16865 0.66 0.997369
Target:  5'- uGCGUACACa-UGGGCGAgGcGGCGCg- -3'
miRNA:   3'- -UGCAUGUGcaACCCGUUgC-UUGUGgg -5'
1782 5' -51.2 NC_001347.2 + 17474 0.66 0.9984
Target:  5'- aGCGUugGCaccUGGGuCAGCGuauuguuAACGCCUa -3'
miRNA:   3'- -UGCAugUGca-ACCC-GUUGC-------UUGUGGG- -5'
1782 5' -51.2 NC_001347.2 + 19892 0.67 0.996374
Target:  5'- gACGUACACGUUGcuuacCAGCGuGGCugUCa -3'
miRNA:   3'- -UGCAUGUGCAACcc---GUUGC-UUGugGG- -5'
1782 5' -51.2 NC_001347.2 + 20699 1.12 0.008977
Target:  5'- cACGUACACGUUGGGCAACGAACACCCu -3'
miRNA:   3'- -UGCAUGUGCAACCCGUUGCUUGUGGG- -5'
1782 5' -51.2 NC_001347.2 + 27665 0.68 0.990225
Target:  5'- uACGgcACGCGUUacauccGCGACGAACugCCg -3'
miRNA:   3'- -UGCa-UGUGCAAcc----CGUUGCUUGugGG- -5'
1782 5' -51.2 NC_001347.2 + 30947 0.68 0.988906
Target:  5'- uACG-GCACcugGGGUAACGAGCggagcgcgACCCa -3'
miRNA:   3'- -UGCaUGUGcaaCCCGUUGCUUG--------UGGG- -5'
1782 5' -51.2 NC_001347.2 + 34317 0.69 0.987452
Target:  5'- cCGUugACG-UGGGCGGCGAugAg-- -3'
miRNA:   3'- uGCAugUGCaACCCGUUGCUugUggg -5'
1782 5' -51.2 NC_001347.2 + 38014 0.68 0.993458
Target:  5'- ---cGCGCGgccucGGCGGCGGGCGCCg -3'
miRNA:   3'- ugcaUGUGCaac--CCGUUGCUUGUGGg -5'
1782 5' -51.2 NC_001347.2 + 38108 0.69 0.984109
Target:  5'- -gGUACACGUgcccguccagcGGGCAGuaccCGAacacgGCGCCCa -3'
miRNA:   3'- ugCAUGUGCAa----------CCCGUU----GCU-----UGUGGG- -5'
1782 5' -51.2 NC_001347.2 + 38770 0.68 0.993458
Target:  5'- aGCGUcGCGCGc-GGGguGCccACGCCCa -3'
miRNA:   3'- -UGCA-UGUGCaaCCCguUGcuUGUGGG- -5'
1782 5' -51.2 NC_001347.2 + 39537 0.71 0.960322
Target:  5'- cCGUugcGCugGgccaUGGGCGcCGGACACCUc -3'
miRNA:   3'- uGCA---UGugCa---ACCCGUuGCUUGUGGG- -5'
1782 5' -51.2 NC_001347.2 + 43662 0.77 0.735097
Target:  5'- cGCGacagGCGCGUcgaggGGGCAG-GAACACCCu -3'
miRNA:   3'- -UGCa---UGUGCAa----CCCGUUgCUUGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.