miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1784 5' -56 NC_001347.2 + 47327 0.66 0.961887
Target:  5'- gCACGCCagucagcuaaaaacaGCGGACAguccCACGCUGu---- -3'
miRNA:   3'- -GUGCGGg--------------CGCCUGU----GUGCGACuuugu -5'
1784 5' -56 NC_001347.2 + 107350 0.66 0.961549
Target:  5'- -uCGCCUGCGGcUGCgACGC-GAAACGg -3'
miRNA:   3'- guGCGGGCGCCuGUG-UGCGaCUUUGU- -5'
1784 5' -56 NC_001347.2 + 197031 0.66 0.958051
Target:  5'- gACGCgCCGCaGGaucGCACGCgGCUGccGCAg -3'
miRNA:   3'- gUGCG-GGCG-CC---UGUGUG-CGACuuUGU- -5'
1784 5' -56 NC_001347.2 + 75075 0.66 0.958051
Target:  5'- -cCGCCCGUGaGACGCugcaugaGCUGGuAGCGc -3'
miRNA:   3'- guGCGGGCGC-CUGUGug-----CGACU-UUGU- -5'
1784 5' -56 NC_001347.2 + 109595 0.66 0.958051
Target:  5'- uCGCGCCCGaagaGGACAC-CGaCgagGAuuccGACAa -3'
miRNA:   3'- -GUGCGGGCg---CCUGUGuGC-Ga--CU----UUGU- -5'
1784 5' -56 NC_001347.2 + 206246 0.66 0.958051
Target:  5'- gUugGCCCGacuuGACGCuuuauCGCUGGAAUu -3'
miRNA:   3'- -GugCGGGCgc--CUGUGu----GCGACUUUGu -5'
1784 5' -56 NC_001347.2 + 168660 0.66 0.958051
Target:  5'- aCGCGCUCGCGGuCACGuC-CUG-GGCAu -3'
miRNA:   3'- -GUGCGGGCGCCuGUGU-GcGACuUUGU- -5'
1784 5' -56 NC_001347.2 + 93206 0.66 0.95434
Target:  5'- aGCGCUCGCGcuggcGACGagcuCGCUGAGcgGCAg -3'
miRNA:   3'- gUGCGGGCGC-----CUGUgu--GCGACUU--UGU- -5'
1784 5' -56 NC_001347.2 + 174097 0.66 0.95434
Target:  5'- -gUGUCCGCGGACACcCGCg------ -3'
miRNA:   3'- guGCGGGCGCCUGUGuGCGacuuugu -5'
1784 5' -56 NC_001347.2 + 215341 0.66 0.95434
Target:  5'- gCACGCCCcggggcguGCGGGCaaaagcuaACAUGUUGAGugcuACAu -3'
miRNA:   3'- -GUGCGGG--------CGCCUG--------UGUGCGACUU----UGU- -5'
1784 5' -56 NC_001347.2 + 114925 0.66 0.953958
Target:  5'- -cCGCCCGCGcccuucauaugccGACGCugGCU--AACGa -3'
miRNA:   3'- guGCGGGCGC-------------CUGUGugCGAcuUUGU- -5'
1784 5' -56 NC_001347.2 + 52644 0.66 0.950414
Target:  5'- --aGCUCGUGGACcuCACGUUGAAc-- -3'
miRNA:   3'- gugCGGGCGCCUGu-GUGCGACUUugu -5'
1784 5' -56 NC_001347.2 + 106161 0.66 0.950414
Target:  5'- uCGCGCCCGCaGACACcaagcaugccACGCgucGACc -3'
miRNA:   3'- -GUGCGGGCGcCUGUG----------UGCGacuUUGu -5'
1784 5' -56 NC_001347.2 + 114183 0.66 0.950414
Target:  5'- gAUGUCgCGCGGACAgcCGCUGAGc-- -3'
miRNA:   3'- gUGCGG-GCGCCUGUguGCGACUUugu -5'
1784 5' -56 NC_001347.2 + 127579 0.66 0.94627
Target:  5'- -gUGCCCGUGGACGCG-GCcGgcGCGc -3'
miRNA:   3'- guGCGGGCGCCUGUGUgCGaCuuUGU- -5'
1784 5' -56 NC_001347.2 + 162584 0.66 0.94627
Target:  5'- gCACGCCgUGCaGACACuCGUUGAuuCGc -3'
miRNA:   3'- -GUGCGG-GCGcCUGUGuGCGACUuuGU- -5'
1784 5' -56 NC_001347.2 + 118067 0.66 0.94627
Target:  5'- aGCGCCUccgccuCGGACACGCGCccuucGAGAUc -3'
miRNA:   3'- gUGCGGGc-----GCCUGUGUGCGa----CUUUGu -5'
1784 5' -56 NC_001347.2 + 88206 0.66 0.94627
Target:  5'- uGCGUccaCCGCGGACGCcgcucACGCUGuc-CGa -3'
miRNA:   3'- gUGCG---GGCGCCUGUG-----UGCGACuuuGU- -5'
1784 5' -56 NC_001347.2 + 85511 0.66 0.941903
Target:  5'- gGCGgCUugaGCGGGCGCGCGCgcuuGAGCGu -3'
miRNA:   3'- gUGCgGG---CGCCUGUGUGCGac--UUUGU- -5'
1784 5' -56 NC_001347.2 + 168786 0.67 0.937313
Target:  5'- uGCGCCuCGCcaucauGGACGCGCGCgcgGugGCc -3'
miRNA:   3'- gUGCGG-GCG------CCUGUGUGCGa--CuuUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.