miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1788 3' -55.4 NC_001347.2 + 147870 0.66 0.961368
Target:  5'- gGGCGCCGC--GGGAAagGCCGUuGGCGu -3'
miRNA:   3'- -UUGCGGUGguUCCUUggUGGCA-UCGU- -5'
1788 3' -55.4 NC_001347.2 + 125264 0.66 0.961368
Target:  5'- gGACGCCGCUuucccccuGAacGACCGCCgGUGGCGu -3'
miRNA:   3'- -UUGCGGUGG--------UUccUUGGUGG-CAUCGU- -5'
1788 3' -55.4 NC_001347.2 + 97708 0.66 0.961368
Target:  5'- -uCGCauCACCGucGcGCCACCGUAGCc -3'
miRNA:   3'- uuGCG--GUGGUucCuUGGUGGCAUCGu -5'
1788 3' -55.4 NC_001347.2 + 168355 0.66 0.961368
Target:  5'- -cCGCCGCCGcGGuGCCGCCGcucuguucGGCu -3'
miRNA:   3'- uuGCGGUGGUuCCuUGGUGGCa-------UCGu -5'
1788 3' -55.4 NC_001347.2 + 197619 0.66 0.961368
Target:  5'- cGCGCCGCCGAcucGCUGCCGcAGCu -3'
miRNA:   3'- uUGCGGUGGUUccuUGGUGGCaUCGu -5'
1788 3' -55.4 NC_001347.2 + 189586 0.66 0.961368
Target:  5'- cGACGUCAUCAAGGAACgugacuuCUGgcGCGg -3'
miRNA:   3'- -UUGCGGUGGUUCCUUGgu-----GGCauCGU- -5'
1788 3' -55.4 NC_001347.2 + 101691 0.66 0.957793
Target:  5'- cGCGUCugGCCgAAGcGGCCACCGaUAGCAu -3'
miRNA:   3'- uUGCGG--UGG-UUCcUUGGUGGC-AUCGU- -5'
1788 3' -55.4 NC_001347.2 + 156640 0.66 0.953998
Target:  5'- cGGCGCCGCUGccGGGccucGGCCGCCGccgccacccaUGGCGg -3'
miRNA:   3'- -UUGCGGUGGU--UCC----UUGGUGGC----------AUCGU- -5'
1788 3' -55.4 NC_001347.2 + 81592 0.66 0.953998
Target:  5'- -uCGCCGCCGGccGGucGCUcgcgaaaaGCCGUGGCAu -3'
miRNA:   3'- uuGCGGUGGUU--CCu-UGG--------UGGCAUCGU- -5'
1788 3' -55.4 NC_001347.2 + 202912 0.66 0.953998
Target:  5'- -gUGCCGCCAA--AGCCACCGUcaaggucacGGCu -3'
miRNA:   3'- uuGCGGUGGUUccUUGGUGGCA---------UCGu -5'
1788 3' -55.4 NC_001347.2 + 185359 0.66 0.94998
Target:  5'- -cCGCCGCCGuGGGGGCCGCgGaGGgAg -3'
miRNA:   3'- uuGCGGUGGU-UCCUUGGUGgCaUCgU- -5'
1788 3' -55.4 NC_001347.2 + 63652 0.66 0.94998
Target:  5'- gGGCGCCACCAAGaaaGACCuguuugacGCCGUAa-- -3'
miRNA:   3'- -UUGCGGUGGUUCc--UUGG--------UGGCAUcgu -5'
1788 3' -55.4 NC_001347.2 + 68238 0.66 0.949565
Target:  5'- cGGCGCCgcaACCAccgccuccgcuggAGGAuUCGCCGUGGUu -3'
miRNA:   3'- -UUGCGG---UGGU-------------UCCUuGGUGGCAUCGu -5'
1788 3' -55.4 NC_001347.2 + 43096 0.66 0.945734
Target:  5'- cGGCGCCggcauGCCGAGGuggGGCCACUGcgaucAGCGg -3'
miRNA:   3'- -UUGCGG-----UGGUUCC---UUGGUGGCa----UCGU- -5'
1788 3' -55.4 NC_001347.2 + 178763 0.66 0.945734
Target:  5'- cGCGCCGCCGAGc--CUGCCGUuGCc -3'
miRNA:   3'- uUGCGGUGGUUCcuuGGUGGCAuCGu -5'
1788 3' -55.4 NC_001347.2 + 173453 0.67 0.938461
Target:  5'- -uCGCCguggagaauuuucucACCGAGGAACCuuuccAgCGUGGCGa -3'
miRNA:   3'- uuGCGG---------------UGGUUCCUUGG-----UgGCAUCGU- -5'
1788 3' -55.4 NC_001347.2 + 150666 0.67 0.936066
Target:  5'- gGGCGCCAcgguguuugagcCCGAGGuggguuauacaacGACC-CCGUGGCc -3'
miRNA:   3'- -UUGCGGU------------GGUUCC-------------UUGGuGGCAUCGu -5'
1788 3' -55.4 NC_001347.2 + 87714 0.67 0.926431
Target:  5'- cGCGCCACCuu--GACCACgCGaUAGCGa -3'
miRNA:   3'- uUGCGGUGGuuccUUGGUG-GC-AUCGU- -5'
1788 3' -55.4 NC_001347.2 + 186148 0.67 0.926431
Target:  5'- uAGCGCCACgAAGGAGauga-GUAGCAc -3'
miRNA:   3'- -UUGCGGUGgUUCCUUgguggCAUCGU- -5'
1788 3' -55.4 NC_001347.2 + 1046 0.68 0.909494
Target:  5'- cGGCGuCCACCGGGuagaaccccgcGGGCCGCCG-GGCGc -3'
miRNA:   3'- -UUGC-GGUGGUUC-----------CUUGGUGGCaUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.