miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1788 5' -53.3 NC_001347.2 + 21503 0.66 0.990585
Target:  5'- gCCCGUCGGCUGccuGUUCCUGcUGcuacGCGg -3'
miRNA:   3'- -GGGCGGUUGAC---CAAGGAUcACua--CGC- -5'
1788 5' -53.3 NC_001347.2 + 93972 0.66 0.990585
Target:  5'- cCCCGCCGAC-GGUgauUCgUGGUcguggccaacuGGUGCu -3'
miRNA:   3'- -GGGCGGUUGaCCA---AGgAUCA-----------CUACGc -5'
1788 5' -53.3 NC_001347.2 + 174413 0.66 0.988912
Target:  5'- aCCUGCagaAGCUGGUUCgUcgcgucagcggcacGGUGcUGCGu -3'
miRNA:   3'- -GGGCGg--UUGACCAAGgA--------------UCACuACGC- -5'
1788 5' -53.3 NC_001347.2 + 8607 0.66 0.986226
Target:  5'- gCCCGUCAcgcaggcGCUGGcgUUCCcgUAGcgGGUGCGc -3'
miRNA:   3'- -GGGCGGU-------UGACC--AAGG--AUCa-CUACGC- -5'
1788 5' -53.3 NC_001347.2 + 151934 0.67 0.982877
Target:  5'- aCCGCCGGCgUGGUUuCCcGGUcgGAcGCGa -3'
miRNA:   3'- gGGCGGUUG-ACCAA-GGaUCA--CUaCGC- -5'
1788 5' -53.3 NC_001347.2 + 47493 0.68 0.971158
Target:  5'- aCgGCCGACUGG-UUgUGGUGGUGa- -3'
miRNA:   3'- gGgCGGUUGACCaAGgAUCACUACgc -5'
1788 5' -53.3 NC_001347.2 + 199541 0.68 0.965146
Target:  5'- -gCGCCAcgggACUGGUacuUCugcuacuguuaCUGGUGGUGCGa -3'
miRNA:   3'- ggGCGGU----UGACCA---AG-----------GAUCACUACGC- -5'
1788 5' -53.3 NC_001347.2 + 20803 0.69 0.954559
Target:  5'- gCCGCguACUaguaGGUUCCUAcGUGAUGa- -3'
miRNA:   3'- gGGCGguUGA----CCAAGGAU-CACUACgc -5'
1788 5' -53.3 NC_001347.2 + 131739 0.69 0.954559
Target:  5'- gCCGCCGccGC-GGUUgCUacuacuuucuuaAGUGAUGCGa -3'
miRNA:   3'- gGGCGGU--UGaCCAAgGA------------UCACUACGC- -5'
1788 5' -53.3 NC_001347.2 + 7919 0.69 0.93734
Target:  5'- gCCGCCugAGCcGGUagcUCCUucuuuuccccaGGUGGUGCGa -3'
miRNA:   3'- gGGCGG--UUGaCCA---AGGA-----------UCACUACGC- -5'
1788 5' -53.3 NC_001347.2 + 16041 0.72 0.840458
Target:  5'- uUCCGCaCAACUGGUUCCUGcaGGUaCGg -3'
miRNA:   3'- -GGGCG-GUUGACCAAGGAUcaCUAcGC- -5'
1788 5' -53.3 NC_001347.2 + 200352 0.76 0.633467
Target:  5'- gCCGCCgGGCUGGaaCCUAGUGcUGCa -3'
miRNA:   3'- gGGCGG-UUGACCaaGGAUCACuACGc -5'
1788 5' -53.3 NC_001347.2 + 17968 1.1 0.00697
Target:  5'- cCCCGCCAACUGGUUCCUAGUGAUGCGc -3'
miRNA:   3'- -GGGCGGUUGACCAAGGAUCACUACGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.