miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1789 3' -54.7 NC_001347.2 + 67932 0.66 0.981775
Target:  5'- gCCgggACUCACCGucGuucucggaggagggaGGCgGCCGCCGc-- -3'
miRNA:   3'- -GGa--UGAGUGGU--U---------------UCGgCGGCGGCuuc -5'
1789 3' -54.7 NC_001347.2 + 83963 0.66 0.980969
Target:  5'- gCUcAgUCACCAcgacagcuuggaAAGCCGUCGCCuccgcGAAGa -3'
miRNA:   3'- gGA-UgAGUGGU------------UUCGGCGGCGG-----CUUC- -5'
1789 3' -54.7 NC_001347.2 + 2020 0.66 0.980969
Target:  5'- ------gACgGAGGCCGCCGgCGggGa -3'
miRNA:   3'- ggaugagUGgUUUCGGCGGCgGCuuC- -5'
1789 3' -54.7 NC_001347.2 + 168335 0.66 0.980969
Target:  5'- gUUACUgGCgauCAAGuccGCCGCCGCCGcGGu -3'
miRNA:   3'- gGAUGAgUG---GUUU---CGGCGGCGGCuUC- -5'
1789 3' -54.7 NC_001347.2 + 116657 0.66 0.980969
Target:  5'- gCUGCaugaGCaCGgcGCCGCCGCCGucGc -3'
miRNA:   3'- gGAUGag--UG-GUuuCGGCGGCGGCuuC- -5'
1789 3' -54.7 NC_001347.2 + 196133 0.66 0.980969
Target:  5'- --aACUCAUC--GGCCGCUGCCu--- -3'
miRNA:   3'- ggaUGAGUGGuuUCGGCGGCGGcuuc -5'
1789 3' -54.7 NC_001347.2 + 78969 0.66 0.980969
Target:  5'- aCCUGCagcucuccuUCGgCGAgaucguGGCCGCCGCCu--- -3'
miRNA:   3'- -GGAUG---------AGUgGUU------UCGGCGGCGGcuuc -5'
1789 3' -54.7 NC_001347.2 + 143795 0.66 0.980763
Target:  5'- --aGCUgACCAucaucccgaaucaGGGCCGCuCGCUGAAc -3'
miRNA:   3'- ggaUGAgUGGU-------------UUCGGCG-GCGGCUUc -5'
1789 3' -54.7 NC_001347.2 + 165614 0.66 0.978835
Target:  5'- gUCUGUagACCGGcAGCCGcCCGCCGgcGg -3'
miRNA:   3'- -GGAUGagUGGUU-UCGGC-GGCGGCuuC- -5'
1789 3' -54.7 NC_001347.2 + 170371 0.66 0.978835
Target:  5'- gCCgg--CGCgGGAGCUGCCGuCCGAc- -3'
miRNA:   3'- -GGaugaGUGgUUUCGGCGGC-GGCUuc -5'
1789 3' -54.7 NC_001347.2 + 88230 0.66 0.978835
Target:  5'- --cGCUguCCGAGgggucGCUGCCGCCGGu- -3'
miRNA:   3'- ggaUGAguGGUUU-----CGGCGGCGGCUuc -5'
1789 3' -54.7 NC_001347.2 + 94068 0.66 0.978835
Target:  5'- uCCcAgUCACgAuAGCUGCCGUCGGGc -3'
miRNA:   3'- -GGaUgAGUGgUuUCGGCGGCGGCUUc -5'
1789 3' -54.7 NC_001347.2 + 191766 0.66 0.978835
Target:  5'- uCCUGCUCGggguCCAuguGGCgGCacaGCCGcAGg -3'
miRNA:   3'- -GGAUGAGU----GGUu--UCGgCGg--CGGCuUC- -5'
1789 3' -54.7 NC_001347.2 + 197140 0.66 0.978835
Target:  5'- --gGCcCGCCGucGUCGCCGCCccGggGc -3'
miRNA:   3'- ggaUGaGUGGUuuCGGCGGCGG--CuuC- -5'
1789 3' -54.7 NC_001347.2 + 67652 0.66 0.978835
Target:  5'- -aUGCg-GCCGcuGCCGCCGCCa--- -3'
miRNA:   3'- ggAUGagUGGUuuCGGCGGCGGcuuc -5'
1789 3' -54.7 NC_001347.2 + 78586 0.66 0.978835
Target:  5'- aCCUGCUCACgCGcuacGCCucGCgGCgCGAGGa -3'
miRNA:   3'- -GGAUGAGUG-GUuu--CGG--CGgCG-GCUUC- -5'
1789 3' -54.7 NC_001347.2 + 2080 0.66 0.97653
Target:  5'- aCCUGugcCUCcgcaGCCGuacggcGCCGCCGgCGggGg -3'
miRNA:   3'- -GGAU---GAG----UGGUuu----CGGCGGCgGCuuC- -5'
1789 3' -54.7 NC_001347.2 + 228716 0.66 0.97653
Target:  5'- gCCcAgUCGCCAccGCCGCgGCgGAu- -3'
miRNA:   3'- -GGaUgAGUGGUuuCGGCGgCGgCUuc -5'
1789 3' -54.7 NC_001347.2 + 14275 0.66 0.97653
Target:  5'- cCCUGacggCGCUgcAGUuaUGCCGCCGGAGc -3'
miRNA:   3'- -GGAUga--GUGGuuUCG--GCGGCGGCUUC- -5'
1789 3' -54.7 NC_001347.2 + 67846 0.66 0.97653
Target:  5'- aCCaGCgCACCAAcaCCGCCGCCu--- -3'
miRNA:   3'- -GGaUGaGUGGUUucGGCGGCGGcuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.