miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1789 3' -54.7 NC_001347.2 + 17743 1.1 0.005491
Target:  5'- cCCUACUCACCAAAGCCGCCGCCGAAGc -3'
miRNA:   3'- -GGAUGAGUGGUUUCGGCGGCGGCUUC- -5'
1789 3' -54.7 NC_001347.2 + 97504 0.76 0.578727
Target:  5'- aCgUGUUCACCAGGGCgcgCGCCGCCGAGa -3'
miRNA:   3'- -GgAUGAGUGGUUUCG---GCGGCGGCUUc -5'
1789 3' -54.7 NC_001347.2 + 170265 0.76 0.588644
Target:  5'- --cGCUCugCAAAGUauCGCCGCCGAu- -3'
miRNA:   3'- ggaUGAGugGUUUCG--GCGGCGGCUuc -5'
1789 3' -54.7 NC_001347.2 + 178887 0.75 0.628547
Target:  5'- uCCUcgUCGCCGccGCUGCCGCCGGu- -3'
miRNA:   3'- -GGAugAGUGGUuuCGGCGGCGGCUuc -5'
1789 3' -54.7 NC_001347.2 + 90847 0.75 0.638547
Target:  5'- aCCUccGCUCgcACCAccGCCGCCGCCa--- -3'
miRNA:   3'- -GGA--UGAG--UGGUuuCGGCGGCGGcuuc -5'
1789 3' -54.7 NC_001347.2 + 124753 0.74 0.668487
Target:  5'- gCUGUUCACgcggaggacagCAAGGCCGCCGCCGuGGg -3'
miRNA:   3'- gGAUGAGUG-----------GUUUCGGCGGCGGCuUC- -5'
1789 3' -54.7 NC_001347.2 + 107309 0.74 0.668487
Target:  5'- aCCUGCgaccgCACCGAGG-CGCCaGCCGAc- -3'
miRNA:   3'- -GGAUGa----GUGGUUUCgGCGG-CGGCUuc -5'
1789 3' -54.7 NC_001347.2 + 92248 0.73 0.727383
Target:  5'- gCCUGCccgCagGCCGuGGCCGCCGCCauGAGGc -3'
miRNA:   3'- -GGAUGa--G--UGGUuUCGGCGGCGG--CUUC- -5'
1789 3' -54.7 NC_001347.2 + 63107 0.73 0.736974
Target:  5'- gCCgugGC-CGCCGcGGCCGCCGCUGuGGc -3'
miRNA:   3'- -GGa--UGaGUGGUuUCGGCGGCGGCuUC- -5'
1789 3' -54.7 NC_001347.2 + 110572 0.73 0.753075
Target:  5'- gCCgcacgGCUCACCAcuGGGCCGUgcgacugaccguaaCGCCGAAc -3'
miRNA:   3'- -GGa----UGAGUGGU--UUCGGCG--------------GCGGCUUc -5'
1789 3' -54.7 NC_001347.2 + 67332 0.72 0.761482
Target:  5'- uCCUcCUCAUCAucauuaaccccgcAGCCGCCGCCGucGc -3'
miRNA:   3'- -GGAuGAGUGGUu------------UCGGCGGCGGCuuC- -5'
1789 3' -54.7 NC_001347.2 + 128089 0.72 0.774381
Target:  5'- aCCUGCuUCACCAccacCCGCCGCaCGAc- -3'
miRNA:   3'- -GGAUG-AGUGGUuuc-GGCGGCG-GCUuc -5'
1789 3' -54.7 NC_001347.2 + 222752 0.72 0.774381
Target:  5'- gCUGCcgCgGCCAuuGCCGCCGCCGc-- -3'
miRNA:   3'- gGAUGa-G-UGGUuuCGGCGGCGGCuuc -5'
1789 3' -54.7 NC_001347.2 + 208217 0.72 0.809849
Target:  5'- gCUGCUCuuccUCAGagacGGCCGCCGCCGc-- -3'
miRNA:   3'- gGAUGAGu---GGUU----UCGGCGGCGGCuuc -5'
1789 3' -54.7 NC_001347.2 + 80970 0.71 0.818351
Target:  5'- aCUAC-CACCGgcGCCGCCguuGCCGuAGa -3'
miRNA:   3'- gGAUGaGUGGUuuCGGCGG---CGGCuUC- -5'
1789 3' -54.7 NC_001347.2 + 156612 0.71 0.826691
Target:  5'- gUUGCUCucccACCAuGGUCGCCGCUGgcGg -3'
miRNA:   3'- gGAUGAG----UGGUuUCGGCGGCGGCuuC- -5'
1789 3' -54.7 NC_001347.2 + 68062 0.71 0.826691
Target:  5'- aCCgccAC-CACCAgcGCCGCCGCCu--- -3'
miRNA:   3'- -GGa--UGaGUGGUuuCGGCGGCGGcuuc -5'
1789 3' -54.7 NC_001347.2 + 63915 0.71 0.834863
Target:  5'- aCCagUAC-CACCGcuGCCGCCGCCa--- -3'
miRNA:   3'- -GG--AUGaGUGGUuuCGGCGGCGGcuuc -5'
1789 3' -54.7 NC_001347.2 + 156647 0.71 0.834863
Target:  5'- gCUGCcggGCCucGGCCGCCGCCGc-- -3'
miRNA:   3'- gGAUGag-UGGuuUCGGCGGCGGCuuc -5'
1789 3' -54.7 NC_001347.2 + 142353 0.71 0.846006
Target:  5'- gCUGgaCGCCGAcGCCcagcgauuaacggacGCCGCCGggGg -3'
miRNA:   3'- gGAUgaGUGGUUuCGG---------------CGGCGGCuuC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.