miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1789 3' -54.7 NC_001347.2 + 67698 0.66 0.974045
Target:  5'- gCUGCUCcgucUCGuucuuGCCGCCGCCGc-- -3'
miRNA:   3'- gGAUGAGu---GGUuu---CGGCGGCGGCuuc -5'
1789 3' -54.7 NC_001347.2 + 191961 0.66 0.974045
Target:  5'- aCCUcGCUCGUCGcuGUCGCCGCCa--- -3'
miRNA:   3'- -GGA-UGAGUGGUuuCGGCGGCGGcuuc -5'
1789 3' -54.7 NC_001347.2 + 120739 0.66 0.974045
Target:  5'- uCCUGCU-ACCGuucCCGCCGCCu--- -3'
miRNA:   3'- -GGAUGAgUGGUuucGGCGGCGGcuuc -5'
1789 3' -54.7 NC_001347.2 + 169098 0.66 0.972466
Target:  5'- gCCUGCUCgaaagcguguacacgGCCucGGCCGCgcgCGCCGc-- -3'
miRNA:   3'- -GGAUGAG---------------UGGuuUCGGCG---GCGGCuuc -5'
1789 3' -54.7 NC_001347.2 + 166103 0.66 0.972466
Target:  5'- gCCUccaagaACUCGCgUAAggcgcgauccgcuucGGCCGCCGCCGc-- -3'
miRNA:   3'- -GGA------UGAGUG-GUU---------------UCGGCGGCGGCuuc -5'
1789 3' -54.7 NC_001347.2 + 197607 0.66 0.971375
Target:  5'- --aACUUugUAGuGCgCGCCGCCGAc- -3'
miRNA:   3'- ggaUGAGugGUUuCG-GCGGCGGCUuc -5'
1789 3' -54.7 NC_001347.2 + 73711 0.66 0.971375
Target:  5'- ------gGCCGGGGuccgcgggcaCCGCCGCCGGAGg -3'
miRNA:   3'- ggaugagUGGUUUC----------GGCGGCGGCUUC- -5'
1789 3' -54.7 NC_001347.2 + 80865 0.66 0.971375
Target:  5'- aCUAC-CACC---GCCGCCGCUaGAAu -3'
miRNA:   3'- gGAUGaGUGGuuuCGGCGGCGG-CUUc -5'
1789 3' -54.7 NC_001347.2 + 64847 0.67 0.968513
Target:  5'- uCCUcAgUCGCCGucAGCgucgcucuacCGCCGCCGAGa -3'
miRNA:   3'- -GGA-UgAGUGGUu-UCG----------GCGGCGGCUUc -5'
1789 3' -54.7 NC_001347.2 + 21613 0.67 0.965453
Target:  5'- cCUUGCUgAUguGccAGCCGUCGCCGcAGg -3'
miRNA:   3'- -GGAUGAgUGguU--UCGGCGGCGGCuUC- -5'
1789 3' -54.7 NC_001347.2 + 135436 0.67 0.965453
Target:  5'- --aGCccaACCGGAGCCGCCGa-GAGGg -3'
miRNA:   3'- ggaUGag-UGGUUUCGGCGGCggCUUC- -5'
1789 3' -54.7 NC_001347.2 + 140157 0.67 0.965453
Target:  5'- -gUGCUCAaguuUCAGGGCgCGCCGCUcAAGg -3'
miRNA:   3'- ggAUGAGU----GGUUUCG-GCGGCGGcUUC- -5'
1789 3' -54.7 NC_001347.2 + 90826 0.67 0.965453
Target:  5'- uCCU-CUCGCC---GCUGCCGCCu--- -3'
miRNA:   3'- -GGAuGAGUGGuuuCGGCGGCGGcuuc -5'
1789 3' -54.7 NC_001347.2 + 125530 0.67 0.96219
Target:  5'- --cACUcCACCucGGCCGCCgGCCGcguguGAGg -3'
miRNA:   3'- ggaUGA-GUGGuuUCGGCGG-CGGC-----UUC- -5'
1789 3' -54.7 NC_001347.2 + 67290 0.67 0.96219
Target:  5'- aCUGCgguggUGCCuccGCCGCCucaGCCGGAGc -3'
miRNA:   3'- gGAUGa----GUGGuuuCGGCGG---CGGCUUC- -5'
1789 3' -54.7 NC_001347.2 + 110454 0.67 0.96219
Target:  5'- -gUACUgGCCuuugcGCUGCCGCUGGAc -3'
miRNA:   3'- ggAUGAgUGGuuu--CGGCGGCGGCUUc -5'
1789 3' -54.7 NC_001347.2 + 83929 0.67 0.96219
Target:  5'- --cGCUgGCCAcAGCCuCCGgCGAAGa -3'
miRNA:   3'- ggaUGAgUGGUuUCGGcGGCgGCUUC- -5'
1789 3' -54.7 NC_001347.2 + 142860 0.67 0.961853
Target:  5'- gCCgcggCACCAGAGacagagaCCGCCGCCGc-- -3'
miRNA:   3'- -GGaugaGUGGUUUC-------GGCGGCGGCuuc -5'
1789 3' -54.7 NC_001347.2 + 198430 0.67 0.960827
Target:  5'- gCCUACgaggcguugggaGCUAcuGCUGCCGCCGGu- -3'
miRNA:   3'- -GGAUGag----------UGGUuuCGGCGGCGGCUuc -5'
1789 3' -54.7 NC_001347.2 + 154837 0.67 0.958719
Target:  5'- --cAgUCGCCGcaguuguucaAAGUCgGCCGCCGAGGu -3'
miRNA:   3'- ggaUgAGUGGU----------UUCGG-CGGCGGCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.