miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1789 3' -54.7 NC_001347.2 + 2020 0.66 0.980969
Target:  5'- ------gACgGAGGCCGCCGgCGggGa -3'
miRNA:   3'- ggaugagUGgUUUCGGCGGCgGCuuC- -5'
1789 3' -54.7 NC_001347.2 + 2080 0.66 0.97653
Target:  5'- aCCUGugcCUCcgcaGCCGuacggcGCCGCCGgCGggGg -3'
miRNA:   3'- -GGAU---GAG----UGGUuu----CGGCGGCgGCuuC- -5'
1789 3' -54.7 NC_001347.2 + 2395 0.68 0.928285
Target:  5'- gCCcGC-CGCCGAGGCCGCgCGgCGGc- -3'
miRNA:   3'- -GGaUGaGUGGUUUCGGCG-GCgGCUuc -5'
1789 3' -54.7 NC_001347.2 + 13515 0.7 0.862776
Target:  5'- -gUGCUCACCcgccgggcggcccGGGCCGCCguGCUGGAGg -3'
miRNA:   3'- ggAUGAGUGGu------------UUCGGCGG--CGGCUUC- -5'
1789 3' -54.7 NC_001347.2 + 14275 0.66 0.97653
Target:  5'- cCCUGacggCGCUgcAGUuaUGCCGCCGGAGc -3'
miRNA:   3'- -GGAUga--GUGGuuUCG--GCGGCGGCUUC- -5'
1789 3' -54.7 NC_001347.2 + 14983 0.69 0.898501
Target:  5'- cCCUuuugugcGCUCACCGagguggaGAGCCGUCGuuGGu- -3'
miRNA:   3'- -GGA-------UGAGUGGU-------UUCGGCGGCggCUuc -5'
1789 3' -54.7 NC_001347.2 + 17743 1.1 0.005491
Target:  5'- cCCUACUCACCAAAGCCGCCGCCGAAGc -3'
miRNA:   3'- -GGAUGAGUGGUUUCGGCGGCGGCUUC- -5'
1789 3' -54.7 NC_001347.2 + 21613 0.67 0.965453
Target:  5'- cCUUGCUgAUguGccAGCCGUCGCCGcAGg -3'
miRNA:   3'- -GGAUGAgUGguU--UCGGCGGCGGCuUC- -5'
1789 3' -54.7 NC_001347.2 + 29977 0.67 0.958719
Target:  5'- gCUGCcCACgGAAcuGUCGUCGCCGGAa -3'
miRNA:   3'- gGAUGaGUGgUUU--CGGCGGCGGCUUc -5'
1789 3' -54.7 NC_001347.2 + 37982 0.7 0.872238
Target:  5'- aCUGCUCGCgguccagcucgggCAGcAGCCGCCGCgCGGc- -3'
miRNA:   3'- gGAUGAGUG-------------GUU-UCGGCGGCG-GCUuc -5'
1789 3' -54.7 NC_001347.2 + 40164 0.67 0.958719
Target:  5'- uCCUGCgaagccgCAcaccCCGAGGCCGCgcacacCGCCGAc- -3'
miRNA:   3'- -GGAUGa------GU----GGUUUCGGCG------GCGGCUuc -5'
1789 3' -54.7 NC_001347.2 + 57904 0.67 0.953888
Target:  5'- gUCUGCUCuccuaguguggaugACCuacGGGCCaUCGCCGAGGa -3'
miRNA:   3'- -GGAUGAG--------------UGGu--UUCGGcGGCGGCUUC- -5'
1789 3' -54.7 NC_001347.2 + 58858 0.69 0.899759
Target:  5'- cCCUuC-CACCGGcAGCgGCaCGCCGGAGu -3'
miRNA:   3'- -GGAuGaGUGGUU-UCGgCG-GCGGCUUC- -5'
1789 3' -54.7 NC_001347.2 + 63107 0.73 0.736974
Target:  5'- gCCgugGC-CGCCGcGGCCGCCGCUGuGGc -3'
miRNA:   3'- -GGa--UGaGUGGUuUCGGCGGCGGCuUC- -5'
1789 3' -54.7 NC_001347.2 + 63915 0.71 0.834863
Target:  5'- aCCagUAC-CACCGcuGCCGCCGCCa--- -3'
miRNA:   3'- -GG--AUGaGUGGUuuCGGCGGCGGcuuc -5'
1789 3' -54.7 NC_001347.2 + 64847 0.67 0.968513
Target:  5'- uCCUcAgUCGCCGucAGCgucgcucuacCGCCGCCGAGa -3'
miRNA:   3'- -GGA-UgAGUGGUu-UCG----------GCGGCGGCUUc -5'
1789 3' -54.7 NC_001347.2 + 65459 0.69 0.917555
Target:  5'- gCCUGCgUCACCAGcuGGacCCGCCGCUa--- -3'
miRNA:   3'- -GGAUG-AGUGGUU--UC--GGCGGCGGcuuc -5'
1789 3' -54.7 NC_001347.2 + 65505 0.69 0.899759
Target:  5'- -aUACUaCGCCGGAcuGCCGCCcgaGCUGAAGc -3'
miRNA:   3'- ggAUGA-GUGGUUU--CGGCGG---CGGCUUC- -5'
1789 3' -54.7 NC_001347.2 + 66585 0.69 0.899759
Target:  5'- ---cCUCGCCGGcGGCCGuuGCCGGc- -3'
miRNA:   3'- ggauGAGUGGUU-UCGGCggCGGCUuc -5'
1789 3' -54.7 NC_001347.2 + 67290 0.67 0.96219
Target:  5'- aCUGCgguggUGCCuccGCCGCCucaGCCGGAGc -3'
miRNA:   3'- gGAUGa----GUGGuuuCGGCGG---CGGCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.