Results 1 - 20 of 95 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1789 | 3' | -54.7 | NC_001347.2 | + | 170265 | 0.76 | 0.588644 |
Target: 5'- --cGCUCugCAAAGUauCGCCGCCGAu- -3' miRNA: 3'- ggaUGAGugGUUUCG--GCGGCGGCUuc -5' |
|||||||
1789 | 3' | -54.7 | NC_001347.2 | + | 94068 | 0.66 | 0.978835 |
Target: 5'- uCCcAgUCACgAuAGCUGCCGUCGGGc -3' miRNA: 3'- -GGaUgAGUGgUuUCGGCGGCGGCUUc -5' |
|||||||
1789 | 3' | -54.7 | NC_001347.2 | + | 88230 | 0.66 | 0.978835 |
Target: 5'- --cGCUguCCGAGgggucGCUGCCGCCGGu- -3' miRNA: 3'- ggaUGAguGGUUU-----CGGCGGCGGCUuc -5' |
|||||||
1789 | 3' | -54.7 | NC_001347.2 | + | 2080 | 0.66 | 0.97653 |
Target: 5'- aCCUGugcCUCcgcaGCCGuacggcGCCGCCGgCGggGg -3' miRNA: 3'- -GGAU---GAG----UGGUuu----CGGCGGCgGCuuC- -5' |
|||||||
1789 | 3' | -54.7 | NC_001347.2 | + | 170371 | 0.66 | 0.978835 |
Target: 5'- gCCgg--CGCgGGAGCUGCCGuCCGAc- -3' miRNA: 3'- -GGaugaGUGgUUUCGGCGGC-GGCUuc -5' |
|||||||
1789 | 3' | -54.7 | NC_001347.2 | + | 165614 | 0.66 | 0.978835 |
Target: 5'- gUCUGUagACCGGcAGCCGcCCGCCGgcGg -3' miRNA: 3'- -GGAUGagUGGUU-UCGGC-GGCGGCuuC- -5' |
|||||||
1789 | 3' | -54.7 | NC_001347.2 | + | 228716 | 0.66 | 0.97653 |
Target: 5'- gCCcAgUCGCCAccGCCGCgGCgGAu- -3' miRNA: 3'- -GGaUgAGUGGUuuCGGCGgCGgCUuc -5' |
|||||||
1789 | 3' | -54.7 | NC_001347.2 | + | 14275 | 0.66 | 0.97653 |
Target: 5'- cCCUGacggCGCUgcAGUuaUGCCGCCGGAGc -3' miRNA: 3'- -GGAUga--GUGGuuUCG--GCGGCGGCUUC- -5' |
|||||||
1789 | 3' | -54.7 | NC_001347.2 | + | 120739 | 0.66 | 0.974045 |
Target: 5'- uCCUGCU-ACCGuucCCGCCGCCu--- -3' miRNA: 3'- -GGAUGAgUGGUuucGGCGGCGGcuuc -5' |
|||||||
1789 | 3' | -54.7 | NC_001347.2 | + | 191766 | 0.66 | 0.978835 |
Target: 5'- uCCUGCUCGggguCCAuguGGCgGCacaGCCGcAGg -3' miRNA: 3'- -GGAUGAGU----GGUu--UCGgCGg--CGGCuUC- -5' |
|||||||
1789 | 3' | -54.7 | NC_001347.2 | + | 197140 | 0.66 | 0.978835 |
Target: 5'- --gGCcCGCCGucGUCGCCGCCccGggGc -3' miRNA: 3'- ggaUGaGUGGUuuCGGCGGCGG--CuuC- -5' |
|||||||
1789 | 3' | -54.7 | NC_001347.2 | + | 67652 | 0.66 | 0.978835 |
Target: 5'- -aUGCg-GCCGcuGCCGCCGCCa--- -3' miRNA: 3'- ggAUGagUGGUuuCGGCGGCGGcuuc -5' |
|||||||
1789 | 3' | -54.7 | NC_001347.2 | + | 78969 | 0.66 | 0.980969 |
Target: 5'- aCCUGCagcucuccuUCGgCGAgaucguGGCCGCCGCCu--- -3' miRNA: 3'- -GGAUG---------AGUgGUU------UCGGCGGCGGcuuc -5' |
|||||||
1789 | 3' | -54.7 | NC_001347.2 | + | 196133 | 0.66 | 0.980969 |
Target: 5'- --aACUCAUC--GGCCGCUGCCu--- -3' miRNA: 3'- ggaUGAGUGGuuUCGGCGGCGGcuuc -5' |
|||||||
1789 | 3' | -54.7 | NC_001347.2 | + | 116657 | 0.66 | 0.980969 |
Target: 5'- gCUGCaugaGCaCGgcGCCGCCGCCGucGc -3' miRNA: 3'- gGAUGag--UG-GUuuCGGCGGCGGCuuC- -5' |
|||||||
1789 | 3' | -54.7 | NC_001347.2 | + | 168335 | 0.66 | 0.980969 |
Target: 5'- gUUACUgGCgauCAAGuccGCCGCCGCCGcGGu -3' miRNA: 3'- gGAUGAgUG---GUUU---CGGCGGCGGCuUC- -5' |
|||||||
1789 | 3' | -54.7 | NC_001347.2 | + | 2020 | 0.66 | 0.980969 |
Target: 5'- ------gACgGAGGCCGCCGgCGggGa -3' miRNA: 3'- ggaugagUGgUUUCGGCGGCgGCuuC- -5' |
|||||||
1789 | 3' | -54.7 | NC_001347.2 | + | 83963 | 0.66 | 0.980969 |
Target: 5'- gCUcAgUCACCAcgacagcuuggaAAGCCGUCGCCuccgcGAAGa -3' miRNA: 3'- gGA-UgAGUGGU------------UUCGGCGGCGG-----CUUC- -5' |
|||||||
1789 | 3' | -54.7 | NC_001347.2 | + | 78586 | 0.66 | 0.978835 |
Target: 5'- aCCUGCUCACgCGcuacGCCucGCgGCgCGAGGa -3' miRNA: 3'- -GGAUGAGUG-GUuu--CGG--CGgCG-GCUUC- -5' |
|||||||
1789 | 3' | -54.7 | NC_001347.2 | + | 143795 | 0.66 | 0.980763 |
Target: 5'- --aGCUgACCAucaucccgaaucaGGGCCGCuCGCUGAAc -3' miRNA: 3'- ggaUGAgUGGU-------------UUCGGCG-GCGGCUUc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home