miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1789 5' -56.5 NC_001347.2 + 128261 0.66 0.957884
Target:  5'- cGCCUAUCacCUGuACGGUgGCGACG-GCGc -3'
miRNA:   3'- -UGGAUAGa-GGC-UGUCG-CGCUGCuCGC- -5'
1789 5' -56.5 NC_001347.2 + 10808 0.66 0.957884
Target:  5'- uACgUGUacgCCauCAGCGCGAUGGGCGc -3'
miRNA:   3'- -UGgAUAga-GGcuGUCGCGCUGCUCGC- -5'
1789 5' -56.5 NC_001347.2 + 2488 0.66 0.957884
Target:  5'- cGCCg--CgCUGugGGCGCG-CGAGCc -3'
miRNA:   3'- -UGGauaGaGGCugUCGCGCuGCUCGc -5'
1789 5' -56.5 NC_001347.2 + 180710 0.66 0.954197
Target:  5'- cAUCgugCUCaucgGGCAGCGCGGCG-GCa -3'
miRNA:   3'- -UGGauaGAGg---CUGUCGCGCUGCuCGc -5'
1789 5' -56.5 NC_001347.2 + 2079 0.66 0.953816
Target:  5'- uACCUGUgcCUCCGcagccguACGGCGCcGCcGGCGg -3'
miRNA:   3'- -UGGAUA--GAGGC-------UGUCGCGcUGcUCGC- -5'
1789 5' -56.5 NC_001347.2 + 63029 0.66 0.953049
Target:  5'- gUCUGUCUgggcgacgcucugcCCGGCGGCGUcAUGGGUGg -3'
miRNA:   3'- uGGAUAGA--------------GGCUGUCGCGcUGCUCGC- -5'
1789 5' -56.5 NC_001347.2 + 109460 0.66 0.946181
Target:  5'- cGCCccgcGUCaCCGGCGGCGgcgccaUGGCGGGCGc -3'
miRNA:   3'- -UGGa---UAGaGGCUGUCGC------GCUGCUCGC- -5'
1789 5' -56.5 NC_001347.2 + 130324 0.66 0.946181
Target:  5'- cCCUAUCguuucaUGAUAGCGUacugucccuucGACGAGCa -3'
miRNA:   3'- uGGAUAGag----GCUGUCGCG-----------CUGCUCGc -5'
1789 5' -56.5 NC_001347.2 + 8771 0.66 0.946181
Target:  5'- gUCggGUUUCCGACGGCGgagcCGGCucaGAGCGg -3'
miRNA:   3'- uGGa-UAGAGGCUGUCGC----GCUG---CUCGC- -5'
1789 5' -56.5 NC_001347.2 + 150586 0.66 0.946181
Target:  5'- gUCgg-CUCCGGCAGUagugGCGGCGucGGCGu -3'
miRNA:   3'- uGGauaGAGGCUGUCG----CGCUGC--UCGC- -5'
1789 5' -56.5 NC_001347.2 + 11997 0.66 0.941848
Target:  5'- ---cAUCUuuGGCAGCGCggcugucaccGACGGGCc -3'
miRNA:   3'- uggaUAGAggCUGUCGCG----------CUGCUCGc -5'
1789 5' -56.5 NC_001347.2 + 184193 0.66 0.941848
Target:  5'- uCCgucuUCUUCGuCGGCGCGAUgccgcaGGGCGg -3'
miRNA:   3'- uGGau--AGAGGCuGUCGCGCUG------CUCGC- -5'
1789 5' -56.5 NC_001347.2 + 116762 0.66 0.937295
Target:  5'- gGCCggaaagagCUgCGACAGCGUGACc-GCGg -3'
miRNA:   3'- -UGGaua-----GAgGCUGUCGCGCUGcuCGC- -5'
1789 5' -56.5 NC_001347.2 + 1669 0.67 0.93252
Target:  5'- aGCCggcgCUCCGACAgacguugcuGCGCGcCGAGg- -3'
miRNA:   3'- -UGGaua-GAGGCUGU---------CGCGCuGCUCgc -5'
1789 5' -56.5 NC_001347.2 + 89585 0.67 0.931538
Target:  5'- cGCCUGcaacaccUCUCUGAgacggucCAGCGaGACGGGCu -3'
miRNA:   3'- -UGGAU-------AGAGGCU-------GUCGCgCUGCUCGc -5'
1789 5' -56.5 NC_001347.2 + 192176 0.67 0.922302
Target:  5'- cGCC-GUCUCCGgaugaGCGGcCGCGgcGCGGGCu -3'
miRNA:   3'- -UGGaUAGAGGC-----UGUC-GCGC--UGCUCGc -5'
1789 5' -56.5 NC_001347.2 + 110502 0.67 0.911194
Target:  5'- cACCUcuuUCagagCCaGCGGCGCGGCG-GCGa -3'
miRNA:   3'- -UGGAu--AGa---GGcUGUCGCGCUGCuCGC- -5'
1789 5' -56.5 NC_001347.2 + 36679 0.67 0.911194
Target:  5'- gACCgggCUCCGGCGG-GUGGCcuGAGCa -3'
miRNA:   3'- -UGGauaGAGGCUGUCgCGCUG--CUCGc -5'
1789 5' -56.5 NC_001347.2 + 96408 0.68 0.899205
Target:  5'- cGCCUGccUCaUCCGACAGaGCGugcaGAGCa -3'
miRNA:   3'- -UGGAU--AG-AGGCUGUCgCGCug--CUCGc -5'
1789 5' -56.5 NC_001347.2 + 78430 0.68 0.892885
Target:  5'- cACCcggC-CCGGCGGCGCc-CGAGCGg -3'
miRNA:   3'- -UGGauaGaGGCUGUCGCGcuGCUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.