Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1789 | 5' | -56.5 | NC_001347.2 | + | 17777 | 1.07 | 0.005432 |
Target: 5'- cACCUAUCUCCGACAGCGCGACGAGCGc -3' miRNA: 3'- -UGGAUAGAGGCUGUCGCGCUGCUCGC- -5' |
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1789 | 5' | -56.5 | NC_001347.2 | + | 18734 | 0.72 | 0.690399 |
Target: 5'- uGCCg--CUUCGACcgcggauuGCGCGGCGAGUGu -3' miRNA: 3'- -UGGauaGAGGCUGu-------CGCGCUGCUCGC- -5' |
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1789 | 5' | -56.5 | NC_001347.2 | + | 196266 | 0.7 | 0.801779 |
Target: 5'- gGCCU-UUUgCGAguGCgGCGACGGGCGc -3' miRNA: 3'- -UGGAuAGAgGCUguCG-CGCUGCUCGC- -5' |
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1789 | 5' | -56.5 | NC_001347.2 | + | 113054 | 0.7 | 0.818715 |
Target: 5'- uGCCgg-CUCCGAgGGagaaaGCGACG-GCGg -3' miRNA: 3'- -UGGauaGAGGCUgUCg----CGCUGCuCGC- -5' |
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1789 | 5' | -56.5 | NC_001347.2 | + | 128441 | 0.69 | 0.826949 |
Target: 5'- cGCCUGcugCguggCCGucaaGCGGCGCGACGGcGCGc -3' miRNA: 3'- -UGGAUa--Ga---GGC----UGUCGCGCUGCU-CGC- -5' |
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1789 | 5' | -56.5 | NC_001347.2 | + | 148587 | 0.69 | 0.850636 |
Target: 5'- aACCcgUAUCUgagCGGCGGCGUGACcGGCGg -3' miRNA: 3'- -UGG--AUAGAg--GCUGUCGCGCUGcUCGC- -5' |
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1789 | 5' | -56.5 | NC_001347.2 | + | 196105 | 0.68 | 0.872663 |
Target: 5'- uGCCUGUUUCUGG-AGCcCGAgGAGCGc -3' miRNA: 3'- -UGGAUAGAGGCUgUCGcGCUgCUCGC- -5' |
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1789 | 5' | -56.5 | NC_001347.2 | + | 149465 | 0.68 | 0.886352 |
Target: 5'- uGCCUGUcCUUCGAUaucgAGUGC-AUGAGCGg -3' miRNA: 3'- -UGGAUA-GAGGCUG----UCGCGcUGCUCGC- -5' |
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1789 | 5' | -56.5 | NC_001347.2 | + | 107421 | 0.68 | 0.886352 |
Target: 5'- cGCCacgCUCCGGCgcGGCG-GACGAGgGa -3' miRNA: 3'- -UGGauaGAGGCUG--UCGCgCUGCUCgC- -5' |
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1789 | 5' | -56.5 | NC_001347.2 | + | 183605 | 0.68 | 0.886352 |
Target: 5'- cGCCgGUUUgCG-CAGCGCGGCaGAGCc -3' miRNA: 3'- -UGGaUAGAgGCuGUCGCGCUG-CUCGc -5' |
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1789 | 5' | -56.5 | NC_001347.2 | + | 170194 | 0.68 | 0.892241 |
Target: 5'- cACCUuuaaUCCGGcCGGCGCGACcaggaugGAGCu -3' miRNA: 3'- -UGGAuag-AGGCU-GUCGCGCUG-------CUCGc -5' |
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1789 | 5' | -56.5 | NC_001347.2 | + | 78430 | 0.68 | 0.892885 |
Target: 5'- cACCcggC-CCGGCGGCGCc-CGAGCGg -3' miRNA: 3'- -UGGauaGaGGCUGUCGCGcuGCUCGC- -5' |
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1789 | 5' | -56.5 | NC_001347.2 | + | 96408 | 0.68 | 0.899205 |
Target: 5'- cGCCUGccUCaUCCGACAGaGCGugcaGAGCa -3' miRNA: 3'- -UGGAU--AG-AGGCUGUCgCGCug--CUCGc -5' |
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1789 | 5' | -56.5 | NC_001347.2 | + | 110502 | 0.67 | 0.911194 |
Target: 5'- cACCUcuuUCagagCCaGCGGCGCGGCG-GCGa -3' miRNA: 3'- -UGGAu--AGa---GGcUGUCGCGCUGCuCGC- -5' |
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1789 | 5' | -56.5 | NC_001347.2 | + | 36679 | 0.67 | 0.911194 |
Target: 5'- gACCgggCUCCGGCGG-GUGGCcuGAGCa -3' miRNA: 3'- -UGGauaGAGGCUGUCgCGCUG--CUCGc -5' |
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1789 | 5' | -56.5 | NC_001347.2 | + | 192176 | 0.67 | 0.922302 |
Target: 5'- cGCC-GUCUCCGgaugaGCGGcCGCGgcGCGGGCu -3' miRNA: 3'- -UGGaUAGAGGC-----UGUC-GCGC--UGCUCGc -5' |
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1789 | 5' | -56.5 | NC_001347.2 | + | 89585 | 0.67 | 0.931538 |
Target: 5'- cGCCUGcaacaccUCUCUGAgacggucCAGCGaGACGGGCu -3' miRNA: 3'- -UGGAU-------AGAGGCU-------GUCGCgCUGCUCGc -5' |
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1789 | 5' | -56.5 | NC_001347.2 | + | 1669 | 0.67 | 0.93252 |
Target: 5'- aGCCggcgCUCCGACAgacguugcuGCGCGcCGAGg- -3' miRNA: 3'- -UGGaua-GAGGCUGU---------CGCGCuGCUCgc -5' |
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1789 | 5' | -56.5 | NC_001347.2 | + | 116762 | 0.66 | 0.937295 |
Target: 5'- gGCCggaaagagCUgCGACAGCGUGACc-GCGg -3' miRNA: 3'- -UGGaua-----GAgGCUGUCGCGCUGcuCGC- -5' |
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1789 | 5' | -56.5 | NC_001347.2 | + | 11997 | 0.66 | 0.941848 |
Target: 5'- ---cAUCUuuGGCAGCGCggcugucaccGACGGGCc -3' miRNA: 3'- uggaUAGAggCUGUCGCG----------CUGCUCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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