miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1789 5' -56.5 NC_001347.2 + 170194 0.68 0.892241
Target:  5'- cACCUuuaaUCCGGcCGGCGCGACcaggaugGAGCu -3'
miRNA:   3'- -UGGAuag-AGGCU-GUCGCGCUG-------CUCGc -5'
1789 5' -56.5 NC_001347.2 + 149465 0.68 0.886352
Target:  5'- uGCCUGUcCUUCGAUaucgAGUGC-AUGAGCGg -3'
miRNA:   3'- -UGGAUA-GAGGCUG----UCGCGcUGCUCGC- -5'
1789 5' -56.5 NC_001347.2 + 183605 0.68 0.886352
Target:  5'- cGCCgGUUUgCG-CAGCGCGGCaGAGCc -3'
miRNA:   3'- -UGGaUAGAgGCuGUCGCGCUG-CUCGc -5'
1789 5' -56.5 NC_001347.2 + 107421 0.68 0.886352
Target:  5'- cGCCacgCUCCGGCgcGGCG-GACGAGgGa -3'
miRNA:   3'- -UGGauaGAGGCUG--UCGCgCUGCUCgC- -5'
1789 5' -56.5 NC_001347.2 + 196105 0.68 0.872663
Target:  5'- uGCCUGUUUCUGG-AGCcCGAgGAGCGc -3'
miRNA:   3'- -UGGAUAGAGGCUgUCGcGCUgCUCGC- -5'
1789 5' -56.5 NC_001347.2 + 148587 0.69 0.850636
Target:  5'- aACCcgUAUCUgagCGGCGGCGUGACcGGCGg -3'
miRNA:   3'- -UGG--AUAGAg--GCUGUCGCGCUGcUCGC- -5'
1789 5' -56.5 NC_001347.2 + 128441 0.69 0.826949
Target:  5'- cGCCUGcugCguggCCGucaaGCGGCGCGACGGcGCGc -3'
miRNA:   3'- -UGGAUa--Ga---GGC----UGUCGCGCUGCU-CGC- -5'
1789 5' -56.5 NC_001347.2 + 113054 0.7 0.818715
Target:  5'- uGCCgg-CUCCGAgGGagaaaGCGACG-GCGg -3'
miRNA:   3'- -UGGauaGAGGCUgUCg----CGCUGCuCGC- -5'
1789 5' -56.5 NC_001347.2 + 196266 0.7 0.801779
Target:  5'- gGCCU-UUUgCGAguGCgGCGACGGGCGc -3'
miRNA:   3'- -UGGAuAGAgGCUguCG-CGCUGCUCGC- -5'
1789 5' -56.5 NC_001347.2 + 18734 0.72 0.690399
Target:  5'- uGCCg--CUUCGACcgcggauuGCGCGGCGAGUGu -3'
miRNA:   3'- -UGGauaGAGGCUGu-------CGCGCUGCUCGC- -5'
1789 5' -56.5 NC_001347.2 + 17777 1.07 0.005432
Target:  5'- cACCUAUCUCCGACAGCGCGACGAGCGc -3'
miRNA:   3'- -UGGAUAGAGGCUGUCGCGCUGCUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.