Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1789 | 5' | -56.5 | NC_001347.2 | + | 18734 | 0.72 | 0.690399 |
Target: 5'- uGCCg--CUUCGACcgcggauuGCGCGGCGAGUGu -3' miRNA: 3'- -UGGauaGAGGCUGu-------CGCGCUGCUCGC- -5' |
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1789 | 5' | -56.5 | NC_001347.2 | + | 11997 | 0.66 | 0.941848 |
Target: 5'- ---cAUCUuuGGCAGCGCggcugucaccGACGGGCc -3' miRNA: 3'- uggaUAGAggCUGUCGCG----------CUGCUCGc -5' |
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1789 | 5' | -56.5 | NC_001347.2 | + | 1669 | 0.67 | 0.93252 |
Target: 5'- aGCCggcgCUCCGACAgacguugcuGCGCGcCGAGg- -3' miRNA: 3'- -UGGaua-GAGGCUGU---------CGCGCuGCUCgc -5' |
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1789 | 5' | -56.5 | NC_001347.2 | + | 89585 | 0.67 | 0.931538 |
Target: 5'- cGCCUGcaacaccUCUCUGAgacggucCAGCGaGACGGGCu -3' miRNA: 3'- -UGGAU-------AGAGGCU-------GUCGCgCUGCUCGc -5' |
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1789 | 5' | -56.5 | NC_001347.2 | + | 110502 | 0.67 | 0.911194 |
Target: 5'- cACCUcuuUCagagCCaGCGGCGCGGCG-GCGa -3' miRNA: 3'- -UGGAu--AGa---GGcUGUCGCGCUGCuCGC- -5' |
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1789 | 5' | -56.5 | NC_001347.2 | + | 192176 | 0.67 | 0.922302 |
Target: 5'- cGCC-GUCUCCGgaugaGCGGcCGCGgcGCGGGCu -3' miRNA: 3'- -UGGaUAGAGGC-----UGUC-GCGC--UGCUCGc -5' |
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1789 | 5' | -56.5 | NC_001347.2 | + | 36679 | 0.67 | 0.911194 |
Target: 5'- gACCgggCUCCGGCGG-GUGGCcuGAGCa -3' miRNA: 3'- -UGGauaGAGGCUGUCgCGCUG--CUCGc -5' |
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1789 | 5' | -56.5 | NC_001347.2 | + | 96408 | 0.68 | 0.899205 |
Target: 5'- cGCCUGccUCaUCCGACAGaGCGugcaGAGCa -3' miRNA: 3'- -UGGAU--AG-AGGCUGUCgCGCug--CUCGc -5' |
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1789 | 5' | -56.5 | NC_001347.2 | + | 170194 | 0.68 | 0.892241 |
Target: 5'- cACCUuuaaUCCGGcCGGCGCGACcaggaugGAGCu -3' miRNA: 3'- -UGGAuag-AGGCU-GUCGCGCUG-------CUCGc -5' |
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1789 | 5' | -56.5 | NC_001347.2 | + | 116762 | 0.66 | 0.937295 |
Target: 5'- gGCCggaaagagCUgCGACAGCGUGACc-GCGg -3' miRNA: 3'- -UGGaua-----GAgGCUGUCGCGCUGcuCGC- -5' |
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1789 | 5' | -56.5 | NC_001347.2 | + | 184193 | 0.66 | 0.941848 |
Target: 5'- uCCgucuUCUUCGuCGGCGCGAUgccgcaGGGCGg -3' miRNA: 3'- uGGau--AGAGGCuGUCGCGCUG------CUCGC- -5' |
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1789 | 5' | -56.5 | NC_001347.2 | + | 150586 | 0.66 | 0.946181 |
Target: 5'- gUCgg-CUCCGGCAGUagugGCGGCGucGGCGu -3' miRNA: 3'- uGGauaGAGGCUGUCG----CGCUGC--UCGC- -5' |
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1789 | 5' | -56.5 | NC_001347.2 | + | 10808 | 0.66 | 0.957884 |
Target: 5'- uACgUGUacgCCauCAGCGCGAUGGGCGc -3' miRNA: 3'- -UGgAUAga-GGcuGUCGCGCUGCUCGC- -5' |
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1789 | 5' | -56.5 | NC_001347.2 | + | 2488 | 0.66 | 0.957884 |
Target: 5'- cGCCg--CgCUGugGGCGCG-CGAGCc -3' miRNA: 3'- -UGGauaGaGGCugUCGCGCuGCUCGc -5' |
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1789 | 5' | -56.5 | NC_001347.2 | + | 180710 | 0.66 | 0.954197 |
Target: 5'- cAUCgugCUCaucgGGCAGCGCGGCG-GCa -3' miRNA: 3'- -UGGauaGAGg---CUGUCGCGCUGCuCGc -5' |
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1789 | 5' | -56.5 | NC_001347.2 | + | 2079 | 0.66 | 0.953816 |
Target: 5'- uACCUGUgcCUCCGcagccguACGGCGCcGCcGGCGg -3' miRNA: 3'- -UGGAUA--GAGGC-------UGUCGCGcUGcUCGC- -5' |
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1789 | 5' | -56.5 | NC_001347.2 | + | 63029 | 0.66 | 0.953049 |
Target: 5'- gUCUGUCUgggcgacgcucugcCCGGCGGCGUcAUGGGUGg -3' miRNA: 3'- uGGAUAGA--------------GGCUGUCGCGcUGCUCGC- -5' |
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1789 | 5' | -56.5 | NC_001347.2 | + | 109460 | 0.66 | 0.946181 |
Target: 5'- cGCCccgcGUCaCCGGCGGCGgcgccaUGGCGGGCGc -3' miRNA: 3'- -UGGa---UAGaGGCUGUCGC------GCUGCUCGC- -5' |
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1789 | 5' | -56.5 | NC_001347.2 | + | 130324 | 0.66 | 0.946181 |
Target: 5'- cCCUAUCguuucaUGAUAGCGUacugucccuucGACGAGCa -3' miRNA: 3'- uGGAUAGag----GCUGUCGCG-----------CUGCUCGc -5' |
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1789 | 5' | -56.5 | NC_001347.2 | + | 8771 | 0.66 | 0.946181 |
Target: 5'- gUCggGUUUCCGACGGCGgagcCGGCucaGAGCGg -3' miRNA: 3'- uGGa-UAGAGGCUGUCGC----GCUG---CUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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