miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17967 3' -50.9 NC_004665.1 + 9734 0.66 0.850969
Target:  5'- cACGg--GCAGAGUCCCAcGAgag-GCCc -3'
miRNA:   3'- -UGCgagUGUCUCAGGGU-CUaaaaCGG- -5'
17967 3' -50.9 NC_004665.1 + 28556 0.66 0.832372
Target:  5'- cUGCUCgcGCAGAGcCUCAGA----GCCg -3'
miRNA:   3'- uGCGAG--UGUCUCaGGGUCUaaaaCGG- -5'
17967 3' -50.9 NC_004665.1 + 11730 0.66 0.822709
Target:  5'- uUGCUCACGGuGUCCUgauaggcagcuuGGGUa--GCCg -3'
miRNA:   3'- uGCGAGUGUCuCAGGG------------UCUAaaaCGG- -5'
17967 3' -50.9 NC_004665.1 + 2760 0.66 0.812819
Target:  5'- cACGCucaUCACGGAGcaUCgCAGAgaagUGCUg -3'
miRNA:   3'- -UGCG---AGUGUCUC--AGgGUCUaaa-ACGG- -5'
17967 3' -50.9 NC_004665.1 + 28845 0.67 0.749407
Target:  5'- uGCGCUCACcguGGAGaCCCAGAa------ -3'
miRNA:   3'- -UGCGAGUG---UCUCaGGGUCUaaaacgg -5'
17967 3' -50.9 NC_004665.1 + 3640 0.68 0.704246
Target:  5'- cUGCUCACGGaAGUCCUcaaGGAcgUUGUUg -3'
miRNA:   3'- uGCGAGUGUC-UCAGGG---UCUaaAACGG- -5'
17967 3' -50.9 NC_004665.1 + 32887 0.7 0.610919
Target:  5'- cACGCagaggCugGGAGaaaaUCCCAGAUg-UGCCu -3'
miRNA:   3'- -UGCGa----GugUCUC----AGGGUCUAaaACGG- -5'
17967 3' -50.9 NC_004665.1 + 3158 1.13 0.000796
Target:  5'- gACGCUCACAGAGUCCCAGAUUUUGCCa -3'
miRNA:   3'- -UGCGAGUGUCUCAGGGUCUAAAACGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.