Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
17968 | 3' | -51 | NC_004665.1 | + | 7155 | 0.67 | 0.7802 |
Target: 5'- cUCACGGAAGUUCUCcuuGAGGAa------ -3' miRNA: 3'- -AGUGCCUUCAGGAG---UUCCUgcaacaa -5' |
|||||||
17968 | 3' | -51 | NC_004665.1 | + | 29047 | 0.67 | 0.75862 |
Target: 5'- cCAUuGAAGUCCUCAAGGGaaucaucggaGUUGa- -3' miRNA: 3'- aGUGcCUUCAGGAGUUCCUg---------CAACaa -5' |
|||||||
17968 | 3' | -51 | NC_004665.1 | + | 6345 | 0.72 | 0.494575 |
Target: 5'- cUCACGGAgccAGUCgCuguacucggagUCGGGGAUGUUGUUg -3' miRNA: 3'- -AGUGCCU---UCAG-G-----------AGUUCCUGCAACAA- -5' |
|||||||
17968 | 3' | -51 | NC_004665.1 | + | 30953 | 0.75 | 0.336051 |
Target: 5'- gCACGGGAGUCCUgaGAGGACaGcUUGUa -3' miRNA: 3'- aGUGCCUUCAGGAg-UUCCUG-C-AACAa -5' |
|||||||
17968 | 3' | -51 | NC_004665.1 | + | 3637 | 1.07 | 0.002255 |
Target: 5'- cUCACGGAAGUCCUCAAGGACGUUGUUg -3' miRNA: 3'- -AGUGCCUUCAGGAGUUCCUGCAACAA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home