miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17969 5' -58.8 NC_004665.1 + 4454 1.08 0.000377
Target:  5'- gCCGACCCCAGAGAAGGCCACGUCGGUc -3'
miRNA:   3'- -GGCUGGGGUCUCUUCCGGUGCAGCCA- -5'
17969 5' -58.8 NC_004665.1 + 27445 0.73 0.162842
Target:  5'- -aGACCUCcuguuAGAGAGGGCCACGgcccccUCGGa -3'
miRNA:   3'- ggCUGGGG-----UCUCUUCCGGUGC------AGCCa -5'
17969 5' -58.8 NC_004665.1 + 18187 0.7 0.248754
Target:  5'- gCGACUCCAGAGAguucAGGUCGCcgaGGUa -3'
miRNA:   3'- gGCUGGGGUCUCU----UCCGGUGcagCCA- -5'
17969 5' -58.8 NC_004665.1 + 3646 0.7 0.268537
Target:  5'- aCCGAUCCCuGAGAuGGgCACGcUGGa -3'
miRNA:   3'- -GGCUGGGGuCUCUuCCgGUGCaGCCa -5'
17969 5' -58.8 NC_004665.1 + 31430 0.69 0.304296
Target:  5'- aCCGGCaCCCGGAaccugcuccaGAAGGCCGCuuagUGGa -3'
miRNA:   3'- -GGCUG-GGGUCU----------CUUCCGGUGca--GCCa -5'
17969 5' -58.8 NC_004665.1 + 503 0.68 0.318813
Target:  5'- aUCGACaCCAGAGccuauaAGGGCCACaagcuggGUCGGg -3'
miRNA:   3'- -GGCUGgGGUCUC------UUCCGGUG-------CAGCCa -5'
17969 5' -58.8 NC_004665.1 + 22075 0.68 0.351888
Target:  5'- gUCGGCCaCAGuGAugAGGCgCAgGUCGGUg -3'
miRNA:   3'- -GGCUGGgGUCuCU--UCCG-GUgCAGCCA- -5'
17969 5' -58.8 NC_004665.1 + 32813 0.67 0.413768
Target:  5'- gCGGCCCCGGuGAcguuuAGGCCACcagaaGUCa-- -3'
miRNA:   3'- gGCUGGGGUCuCU-----UCCGGUG-----CAGcca -5'
17969 5' -58.8 NC_004665.1 + 34997 0.66 0.442261
Target:  5'- aCCGGCgCUCAGuuucuuGGCCAUGUCGa- -3'
miRNA:   3'- -GGCUG-GGGUCucuu--CCGGUGCAGCca -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.