miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1797 3' -58.4 NC_001347.2 + 161959 0.66 0.879333
Target:  5'- uUGGCgucgggGGUGGUCaCGUccaguccGCCGCUCAUu -3'
miRNA:   3'- -AUCGa-----CCGCCAGgGCAu------UGGCGAGUG- -5'
1797 3' -58.4 NC_001347.2 + 7134 0.66 0.879333
Target:  5'- cGGCgUGGaCGGUCuCCGgugaCGUUCGCa -3'
miRNA:   3'- aUCG-ACC-GCCAG-GGCauugGCGAGUG- -5'
1797 3' -58.4 NC_001347.2 + 98841 0.66 0.872347
Target:  5'- aAGUUGGUGGUCCaGUAcACCuuGCUgCGCu -3'
miRNA:   3'- aUCGACCGCCAGGgCAU-UGG--CGA-GUG- -5'
1797 3' -58.4 NC_001347.2 + 89921 0.66 0.872347
Target:  5'- aAGCUGcGCGGUCCacaGUAcaGCaGC-CACa -3'
miRNA:   3'- aUCGAC-CGCCAGGg--CAU--UGgCGaGUG- -5'
1797 3' -58.4 NC_001347.2 + 185925 0.66 0.850198
Target:  5'- aAGCgcGGCGGUCCagcaacUGACCGCggaaaCACu -3'
miRNA:   3'- aUCGa-CCGCCAGGgc----AUUGGCGa----GUG- -5'
1797 3' -58.4 NC_001347.2 + 20859 0.66 0.84943
Target:  5'- gGGCUGGCguuucuaGGUggCCGUGACCGacgUCGCu -3'
miRNA:   3'- aUCGACCG-------CCAg-GGCAUUGGCg--AGUG- -5'
1797 3' -58.4 NC_001347.2 + 1815 0.67 0.842435
Target:  5'- gAGCUGGCGcaguaCG-AGCCGUUCGCg -3'
miRNA:   3'- aUCGACCGCcagg-GCaUUGGCGAGUG- -5'
1797 3' -58.4 NC_001347.2 + 62763 0.67 0.832883
Target:  5'- gAGC-GGCGGccgacCCCGccguugcggccGCCGCUCACa -3'
miRNA:   3'- aUCGaCCGCCa----GGGCau---------UGGCGAGUG- -5'
1797 3' -58.4 NC_001347.2 + 65882 0.67 0.826378
Target:  5'- -cGCUGGCGGg-CCGaccGCCGC-CGCc -3'
miRNA:   3'- auCGACCGCCagGGCau-UGGCGaGUG- -5'
1797 3' -58.4 NC_001347.2 + 209027 0.67 0.818096
Target:  5'- cAGCaacuGCGGUgagCCCGgguuCCGCUCGCg -3'
miRNA:   3'- aUCGac--CGCCA---GGGCauu-GGCGAGUG- -5'
1797 3' -58.4 NC_001347.2 + 91027 0.67 0.804519
Target:  5'- gGGCUGGCccaCUCGUGcaacgaggccuuccuGCCGCUCAUg -3'
miRNA:   3'- aUCGACCGccaGGGCAU---------------UGGCGAGUG- -5'
1797 3' -58.4 NC_001347.2 + 156462 0.67 0.800198
Target:  5'- -cGUUGGCGGUCCggaaccaCGUcACCGUaagcagUCACa -3'
miRNA:   3'- auCGACCGCCAGG-------GCAuUGGCG------AGUG- -5'
1797 3' -58.4 NC_001347.2 + 184489 0.68 0.792329
Target:  5'- cGGCcucgGGCGG-CCCG--GCCGC-CGCg -3'
miRNA:   3'- aUCGa---CCGCCaGGGCauUGGCGaGUG- -5'
1797 3' -58.4 NC_001347.2 + 117900 0.69 0.698869
Target:  5'- gGGCggcGGCgGGUCCCGUGAUgGCaUCGu -3'
miRNA:   3'- aUCGa--CCG-CCAGGGCAUUGgCG-AGUg -5'
1797 3' -58.4 NC_001347.2 + 38393 0.7 0.65954
Target:  5'- -cGCcGGCGGcCuCCGUcuccguGCCGCUCGCc -3'
miRNA:   3'- auCGaCCGCCaG-GGCAu-----UGGCGAGUG- -5'
1797 3' -58.4 NC_001347.2 + 8621 0.71 0.580351
Target:  5'- -cGCUGGCGuUCCCGUAGCgGgUgCGCa -3'
miRNA:   3'- auCGACCGCcAGGGCAUUGgCgA-GUG- -5'
1797 3' -58.4 NC_001347.2 + 8412 1.08 0.0027
Target:  5'- gUAGCUGGCGGUCCCGUAACCGCUCACg -3'
miRNA:   3'- -AUCGACCGCCAGGGCAUUGGCGAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.