miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1797 5' -57.3 NC_001347.2 + 108352 0.66 0.9317
Target:  5'- cGUACGCGUGAgccaGCCCUCGCUgAUCu -3'
miRNA:   3'- -CAUGCGUGCUaa--UGGGGGCGGgUGGu -5'
1797 5' -57.3 NC_001347.2 + 81702 0.66 0.9214
Target:  5'- -cGCGCAgGGUUccACCUCCaGCUUGCCGg -3'
miRNA:   3'- caUGCGUgCUAA--UGGGGG-CGGGUGGU- -5'
1797 5' -57.3 NC_001347.2 + 178745 0.66 0.910209
Target:  5'- -gGCGCAaCGggUGCUgUCCGCgCCGCCGa -3'
miRNA:   3'- caUGCGU-GCuaAUGG-GGGCG-GGUGGU- -5'
1797 5' -57.3 NC_001347.2 + 38293 0.66 0.910209
Target:  5'- uUAgGCACGcaaaucgcGCCCCCGCCgGCg- -3'
miRNA:   3'- cAUgCGUGCuaa-----UGGGGGCGGgUGgu -5'
1797 5' -57.3 NC_001347.2 + 178225 0.66 0.909626
Target:  5'- aGUugGCugGAgcgacacUGCCCCCcguuggaccaggaGCUCAUCAu -3'
miRNA:   3'- -CAugCGugCUa------AUGGGGG-------------CGGGUGGU- -5'
1797 5' -57.3 NC_001347.2 + 120112 0.67 0.904282
Target:  5'- --cCGCACGGUagaaaugGCCUUCGCCUACgCAu -3'
miRNA:   3'- cauGCGUGCUAa------UGGGGGCGGGUG-GU- -5'
1797 5' -57.3 NC_001347.2 + 38948 0.67 0.904282
Target:  5'- -cGCGCACagacccucggGAUggccgGCCUugUCGCCCACCGu -3'
miRNA:   3'- caUGCGUG----------CUAa----UGGG--GGCGGGUGGU- -5'
1797 5' -57.3 NC_001347.2 + 114708 0.67 0.891776
Target:  5'- -gAUGCGC-AUUACCCCCGa-CGCCu -3'
miRNA:   3'- caUGCGUGcUAAUGGGGGCggGUGGu -5'
1797 5' -57.3 NC_001347.2 + 28170 0.67 0.891776
Target:  5'- -gGCGCGUGAcgGCCCCCuaCCugCGc -3'
miRNA:   3'- caUGCGUGCUaaUGGGGGcgGGugGU- -5'
1797 5' -57.3 NC_001347.2 + 38178 0.67 0.891776
Target:  5'- -gGCGCGCGGcacgGUCCCCGaCgCCGCCGg -3'
miRNA:   3'- caUGCGUGCUaa--UGGGGGC-G-GGUGGU- -5'
1797 5' -57.3 NC_001347.2 + 200207 0.67 0.891776
Target:  5'- uGUGCG-ACGG--GCCCCCgggcucGCCCACUg -3'
miRNA:   3'- -CAUGCgUGCUaaUGGGGG------CGGGUGGu -5'
1797 5' -57.3 NC_001347.2 + 220627 0.67 0.884533
Target:  5'- -cACGCAUcuuUUACuguaaauCCCCGUCCACCGu -3'
miRNA:   3'- caUGCGUGcu-AAUG-------GGGGCGGGUGGU- -5'
1797 5' -57.3 NC_001347.2 + 3863 0.67 0.87773
Target:  5'- cGUACGCccaACGGcaaacgcaacuauUUGCCCCCcCCCcCCAc -3'
miRNA:   3'- -CAUGCG---UGCU-------------AAUGGGGGcGGGuGGU- -5'
1797 5' -57.3 NC_001347.2 + 135693 0.67 0.871432
Target:  5'- ---aGCugGGUgggggAUCCCCggucGCCCACCGc -3'
miRNA:   3'- caugCGugCUAa----UGGGGG----CGGGUGGU- -5'
1797 5' -57.3 NC_001347.2 + 76965 0.68 0.864244
Target:  5'- -gAUGCugGAagucUUGCCggCGCCCGCCGu -3'
miRNA:   3'- caUGCGugCU----AAUGGggGCGGGUGGU- -5'
1797 5' -57.3 NC_001347.2 + 172765 0.68 0.862049
Target:  5'- cGUGCGCucaaggagaacaccACGGUUACCuuCuuGCCCACg- -3'
miRNA:   3'- -CAUGCG--------------UGCUAAUGG--GggCGGGUGgu -5'
1797 5' -57.3 NC_001347.2 + 107811 0.68 0.849288
Target:  5'- -cGCGCugGAggACCUgCUGCCCAUg- -3'
miRNA:   3'- caUGCGugCUaaUGGG-GGCGGGUGgu -5'
1797 5' -57.3 NC_001347.2 + 38376 0.68 0.841531
Target:  5'- -cGCGCACGGcgcgUCCCCGCCgGCg- -3'
miRNA:   3'- caUGCGUGCUaau-GGGGGCGGgUGgu -5'
1797 5' -57.3 NC_001347.2 + 78686 0.68 0.833597
Target:  5'- -gGCGCGCGAcgcggcGCCCuuCCGUCCGCUg -3'
miRNA:   3'- caUGCGUGCUaa----UGGG--GGCGGGUGGu -5'
1797 5' -57.3 NC_001347.2 + 3391 0.69 0.817223
Target:  5'- -gACGCAUGAUUAgcaauauuauucCCCCCcCCCcCCAu -3'
miRNA:   3'- caUGCGUGCUAAU------------GGGGGcGGGuGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.