miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17970 3' -53.2 NC_004665.1 + 32106 0.66 0.737326
Target:  5'- uCAGCGaGGUugacgaUCUUGCGGGCACGg-GCa -3'
miRNA:   3'- -GUUGCaCCG------GGAAUGCCUGUGUgaCG- -5'
17970 3' -53.2 NC_004665.1 + 32335 0.66 0.726317
Target:  5'- aGACGcaGCUCgUugGGugGCACUGUu -3'
miRNA:   3'- gUUGCacCGGGaAugCCugUGUGACG- -5'
17970 3' -53.2 NC_004665.1 + 11268 0.67 0.681392
Target:  5'- -uGCGUGGCUCggGCGGu----CUGCg -3'
miRNA:   3'- guUGCACCGGGaaUGCCuguguGACG- -5'
17970 3' -53.2 NC_004665.1 + 36888 0.67 0.670001
Target:  5'- --gUGUGGCCuCUgGCGGAUGCGgUGa -3'
miRNA:   3'- guuGCACCGG-GAaUGCCUGUGUgACg -5'
17970 3' -53.2 NC_004665.1 + 21968 0.67 0.658572
Target:  5'- -uGCGUGGCUacaACGGuuACGCcaACUGCg -3'
miRNA:   3'- guUGCACCGGgaaUGCC--UGUG--UGACG- -5'
17970 3' -53.2 NC_004665.1 + 13742 0.67 0.647116
Target:  5'- uCGACGaaGGCCgUuaUGCGGACACcgUGCu -3'
miRNA:   3'- -GUUGCa-CCGGgA--AUGCCUGUGugACG- -5'
17970 3' -53.2 NC_004665.1 + 12924 0.69 0.52245
Target:  5'- ---aGUGuGUCCgUAUGGAgCACGCUGCu -3'
miRNA:   3'- guugCAC-CGGGaAUGCCU-GUGUGACG- -5'
17970 3' -53.2 NC_004665.1 + 16673 0.7 0.468662
Target:  5'- -uACGaGGCCCaUGCGGAaauCugUGCg -3'
miRNA:   3'- guUGCaCCGGGaAUGCCUgu-GugACG- -5'
17970 3' -53.2 NC_004665.1 + 19799 0.72 0.379715
Target:  5'- uCGACG-GuGCUCUUACGGGCAgcCGCUGg -3'
miRNA:   3'- -GUUGCaC-CGGGAAUGCCUGU--GUGACg -5'
17970 3' -53.2 NC_004665.1 + 12984 0.74 0.272669
Target:  5'- gCAGCGUGcUCCaUACGGACACACUcaaugGCu -3'
miRNA:   3'- -GUUGCACcGGGaAUGCCUGUGUGA-----CG- -5'
17970 3' -53.2 NC_004665.1 + 5061 1.12 0.000584
Target:  5'- uCAACGUGGCCCUUACGGACACACUGCa -3'
miRNA:   3'- -GUUGCACCGGGAAUGCCUGUGUGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.