miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17970 5' -53.8 NC_004665.1 + 5027 1.07 0.001101
Target:  5'- cGUACUCGAUGCCCUCAGCGAUCACGUc -3'
miRNA:   3'- -CAUGAGCUACGGGAGUCGCUAGUGCA- -5'
17970 5' -53.8 NC_004665.1 + 12000 0.75 0.21725
Target:  5'- -gACUUGAUGCCCUCAaUGAUCGgGUc -3'
miRNA:   3'- caUGAGCUACGGGAGUcGCUAGUgCA- -5'
17970 5' -53.8 NC_004665.1 + 31835 0.68 0.518541
Target:  5'- gGUACUCGGUGUUCaggaUCAGC--UCACGUc -3'
miRNA:   3'- -CAUGAGCUACGGG----AGUCGcuAGUGCA- -5'
17970 5' -53.8 NC_004665.1 + 13317 0.68 0.539586
Target:  5'- -aACUCGAccgggguguauggUGCCC-CAGCGAaggucUCGCGc -3'
miRNA:   3'- caUGAGCU-------------ACGGGaGUCGCU-----AGUGCa -5'
17970 5' -53.8 NC_004665.1 + 33835 0.68 0.551902
Target:  5'- -aGCUUGcagGUCCUCAaCGGUCACGUc -3'
miRNA:   3'- caUGAGCua-CGGGAGUcGCUAGUGCA- -5'
17970 5' -53.8 NC_004665.1 + 13144 0.68 0.551902
Target:  5'- cUGCUCGGUGCCaccuuUCGGCuGAUacCACGa -3'
miRNA:   3'- cAUGAGCUACGGg----AGUCG-CUA--GUGCa -5'
17970 5' -53.8 NC_004665.1 + 16403 0.67 0.585883
Target:  5'- -cGCUCgGGUGCCUUCAGgGaAUCAgGa -3'
miRNA:   3'- caUGAG-CUACGGGAGUCgC-UAGUgCa -5'
17970 5' -53.8 NC_004665.1 + 10061 0.67 0.585883
Target:  5'- -aACUCGAUGCagUCGGCG-UUGCGg -3'
miRNA:   3'- caUGAGCUACGggAGUCGCuAGUGCa -5'
17970 5' -53.8 NC_004665.1 + 23242 0.67 0.597307
Target:  5'- -aGCUCGGaacgUGCgcagagacauCCUCAGCGGacuUCACGUc -3'
miRNA:   3'- caUGAGCU----ACG----------GGAGUCGCU---AGUGCA- -5'
17970 5' -53.8 NC_004665.1 + 1390 0.67 0.620242
Target:  5'- aUGCUUGcgGCgaaCCUUGGUGGUCugGUg -3'
miRNA:   3'- cAUGAGCuaCG---GGAGUCGCUAGugCA- -5'
17970 5' -53.8 NC_004665.1 + 36346 0.66 0.643221
Target:  5'- cGU-CUCGAUGCCCUCgccauuGGCGuUCAg-- -3'
miRNA:   3'- -CAuGAGCUACGGGAG------UCGCuAGUgca -5'
17970 5' -53.8 NC_004665.1 + 1688 0.66 0.666156
Target:  5'- -gGCUCGuugaguUGCCCUgCcuCGAUCAUGUg -3'
miRNA:   3'- caUGAGCu-----ACGGGA-GucGCUAGUGCA- -5'
17970 5' -53.8 NC_004665.1 + 34406 0.66 0.670729
Target:  5'- cUGCU-GGUGCCCUCGGUcuggccuacacaaagGGUCACu- -3'
miRNA:   3'- cAUGAgCUACGGGAGUCG---------------CUAGUGca -5'
17970 5' -53.8 NC_004665.1 + 22724 0.66 0.688951
Target:  5'- -cAgUCGAacUGCCCgUCAGCGGcccUCACa- -3'
miRNA:   3'- caUgAGCU--ACGGG-AGUCGCU---AGUGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.