miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17972 5' -50.8 NC_004665.1 + 16570 0.66 0.829897
Target:  5'- aGUGAUaACCCaauGGCgUCaAUGCGggGACc -3'
miRNA:   3'- cUAUUAgUGGG---CCG-AG-UACGCuuCUG- -5'
17972 5' -50.8 NC_004665.1 + 4958 0.66 0.819125
Target:  5'- ----uUgGCaCCGGCUCAUccuuccgGCGAAGAUc -3'
miRNA:   3'- cuauuAgUG-GGCCGAGUA-------CGCUUCUG- -5'
17972 5' -50.8 NC_004665.1 + 2090 0.67 0.746019
Target:  5'- -uUGAUCGCCCacgguguuGCUUGUGCGAGguuGACg -3'
miRNA:   3'- cuAUUAGUGGGc-------CGAGUACGCUU---CUG- -5'
17972 5' -50.8 NC_004665.1 + 26684 0.68 0.734791
Target:  5'- ---uGUCACCCGGCUCAccaGAGcGCa -3'
miRNA:   3'- cuauUAGUGGGCCGAGUacgCUUcUG- -5'
17972 5' -50.8 NC_004665.1 + 2200 0.69 0.66543
Target:  5'- cGAU-GUCACCCGGCUUGaucgGC-AGGGCu -3'
miRNA:   3'- -CUAuUAGUGGGCCGAGUa---CGcUUCUG- -5'
17972 5' -50.8 NC_004665.1 + 6094 1.1 0.001432
Target:  5'- cGAUAAUCACCCGGCUCAUGCGAAGACc -3'
miRNA:   3'- -CUAUUAGUGGGCCGAGUACGCUUCUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.