miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17974 3' -57.3 NC_004665.1 + 2784 0.66 0.474115
Target:  5'- gGAGCAGGuUCACa-GCACGaCCACCAc -3'
miRNA:   3'- -CUUGUCC-AGUGccCGUGUcGGUGGUc -5'
17974 3' -57.3 NC_004665.1 + 26230 0.66 0.474115
Target:  5'- -cGCAGGUCuuGGaGCAU--CCGCCAGc -3'
miRNA:   3'- cuUGUCCAGugCC-CGUGucGGUGGUC- -5'
17974 3' -57.3 NC_004665.1 + 25133 0.66 0.473081
Target:  5'- aGGGCAGcUCgGCGGGUgguucuaACGGCaCACCAGc -3'
miRNA:   3'- -CUUGUCcAG-UGCCCG-------UGUCG-GUGGUC- -5'
17974 3' -57.3 NC_004665.1 + 23648 0.66 0.453638
Target:  5'- cGAACacgAGG-CGCGGGaCugGGCgACCAa -3'
miRNA:   3'- -CUUG---UCCaGUGCCC-GugUCGgUGGUc -5'
17974 3' -57.3 NC_004665.1 + 6689 0.67 0.414185
Target:  5'- cAGCAuGUCGCuGGCAUAGCC-CCAu -3'
miRNA:   3'- cUUGUcCAGUGcCCGUGUCGGuGGUc -5'
17974 3' -57.3 NC_004665.1 + 26743 0.67 0.395265
Target:  5'- cGAACcgauGGUCGCuGGguCAGCCGCaUAGg -3'
miRNA:   3'- -CUUGu---CCAGUGcCCguGUCGGUG-GUC- -5'
17974 3' -57.3 NC_004665.1 + 14898 0.69 0.317334
Target:  5'- ---aGGGUCACGaGGUACucauucaucccGGCCACCGu -3'
miRNA:   3'- cuugUCCAGUGC-CCGUG-----------UCGGUGGUc -5'
17974 3' -57.3 NC_004665.1 + 30002 0.69 0.289568
Target:  5'- cGAACAGGUUACGGGCuucgAggaaguuguuguucuCAGCaccCACCAGc -3'
miRNA:   3'- -CUUGUCCAGUGCCCG----U---------------GUCG---GUGGUC- -5'
17974 3' -57.3 NC_004665.1 + 31096 0.7 0.279296
Target:  5'- -uGCAGGcUCA-GGGUAU-GCCACCAGa -3'
miRNA:   3'- cuUGUCC-AGUgCCCGUGuCGGUGGUC- -5'
17974 3' -57.3 NC_004665.1 + 25847 0.7 0.272138
Target:  5'- cGGugAGGUCAucuCGGGCuacuucaacaACGGCUugCAGa -3'
miRNA:   3'- -CUugUCCAGU---GCCCG----------UGUCGGugGUC- -5'
17974 3' -57.3 NC_004665.1 + 28514 0.72 0.197416
Target:  5'- cGAGCAGGcCACuGGCAUcgaaGGCCACUAu -3'
miRNA:   3'- -CUUGUCCaGUGcCCGUG----UCGGUGGUc -5'
17974 3' -57.3 NC_004665.1 + 20661 0.73 0.173874
Target:  5'- cGGACAGGaucgcgcuguagucuUCugGGGCGCAGUagaagcgacgauCACCAGc -3'
miRNA:   3'- -CUUGUCC---------------AGugCCCGUGUCG------------GUGGUC- -5'
17974 3' -57.3 NC_004665.1 + 32087 0.74 0.141234
Target:  5'- -uGCGGG-CACGGGCAUcaaGGUCACCAu -3'
miRNA:   3'- cuUGUCCaGUGCCCGUG---UCGGUGGUc -5'
17974 3' -57.3 NC_004665.1 + 2589 0.75 0.122459
Target:  5'- uGAGCGGGUCGUGGGCACAGCgaagaAUCAu -3'
miRNA:   3'- -CUUGUCCAGUGCCCGUGUCGg----UGGUc -5'
17974 3' -57.3 NC_004665.1 + 9059 1.08 0.000424
Target:  5'- aGAACAGGUCACGGGCACAGCCACCAGc -3'
miRNA:   3'- -CUUGUCCAGUGCCCGUGUCGGUGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.