miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17974 5' -53.6 NC_004665.1 + 25388 0.77 0.176789
Target:  5'- aGCCGAUGagaGGUCCAAUGAGAUcauccGCa -3'
miRNA:   3'- gCGGCUACgggUCAGGUUACUCUA-----CG- -5'
17974 5' -53.6 NC_004665.1 + 32709 0.71 0.38145
Target:  5'- uGCUGGUGCCCAGaCCAAUGccaacGGAa-- -3'
miRNA:   3'- gCGGCUACGGGUCaGGUUAC-----UCUacg -5'
17974 5' -53.6 NC_004665.1 + 9526 0.69 0.513432
Target:  5'- aGCUcaugGUCCAGUCCcgaagGGGAUGCa -3'
miRNA:   3'- gCGGcua-CGGGUCAGGuua--CUCUACG- -5'
17974 5' -53.6 NC_004665.1 + 1560 0.67 0.603227
Target:  5'- gGCCcucGCCCAG-CgCAAUGGGAUGa -3'
miRNA:   3'- gCGGcuaCGGGUCaG-GUUACUCUACg -5'
17974 5' -53.6 NC_004665.1 + 13358 0.66 0.671918
Target:  5'- cCGacaaCGGUGCUCcgaaGGUUgaCGAUGAGGUGCu -3'
miRNA:   3'- -GCg---GCUACGGG----UCAG--GUUACUCUACG- -5'
17974 5' -53.6 NC_004665.1 + 6750 0.66 0.683292
Target:  5'- uGCCGAUcuggGCUgAGUCCAucGAGAccGCu -3'
miRNA:   3'- gCGGCUA----CGGgUCAGGUuaCUCUa-CG- -5'
17974 5' -53.6 NC_004665.1 + 9024 1.12 0.000538
Target:  5'- gCGCCGAUGCCCAGUCCAAUGAGAUGCu -3'
miRNA:   3'- -GCGGCUACGGGUCAGGUUACUCUACG- -5'
17974 5' -53.6 NC_004665.1 + 31521 0.69 0.535464
Target:  5'- uGCCGGUcauguaGCCCAGcUCUuggGAGcgGCg -3'
miRNA:   3'- gCGGCUA------CGGGUC-AGGuuaCUCuaCG- -5'
17974 5' -53.6 NC_004665.1 + 32191 0.67 0.626132
Target:  5'- aGCCGAUGCCUgagcuuGGUUCAAaGcAGAgccUGCc -3'
miRNA:   3'- gCGGCUACGGG------UCAGGUUaC-UCU---ACG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.