Results 1 - 8 of 8 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 17975 | 3' | -58.7 | NC_004665.1 | + | 23356 | 0.67 | 0.389868 |
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Target: 5'- uCGGCgAUGCGGCuaCCACccGUGUCCUCGc -3' miRNA: 3'- -GCCG-UGCGCUG--GGUGcuCGUAGGAGU- -5' |
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| 17975 | 3' | -58.7 | NC_004665.1 | + | 30320 | 0.67 | 0.389868 |
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Target: 5'- cCGGgAUgGUGACCaAUGGGCAUCUUCGg -3' miRNA: 3'- -GCCgUG-CGCUGGgUGCUCGUAGGAGU- -5' |
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| 17975 | 3' | -58.7 | NC_004665.1 | + | 4536 | 0.67 | 0.363343 |
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Target: 5'- gGGUGCGUGGCUUACGGGUcUUCUUg -3' miRNA: 3'- gCCGUGCGCUGGGUGCUCGuAGGAGu -5' |
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| 17975 | 3' | -58.7 | NC_004665.1 | + | 27201 | 0.68 | 0.329968 |
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Target: 5'- aGGCAC-CGACUCugGGGaCAUCgUUAu -3' miRNA: 3'- gCCGUGcGCUGGGugCUC-GUAGgAGU- -5' |
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| 17975 | 3' | -58.7 | NC_004665.1 | + | 18109 | 0.68 | 0.321986 |
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Target: 5'- aGcGCACaGCGAUCCACGgcagGGCAUCUUgAg -3' miRNA: 3'- gC-CGUG-CGCUGGGUGC----UCGUAGGAgU- -5' |
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| 17975 | 3' | -58.7 | NC_004665.1 | + | 10306 | 0.74 | 0.123533 |
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Target: 5'- aGaGCugGCGACCgAacaGAGCGUCCUUg -3' miRNA: 3'- gC-CGugCGCUGGgUg--CUCGUAGGAGu -5' |
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| 17975 | 3' | -58.7 | NC_004665.1 | + | 36516 | 0.77 | 0.082964 |
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Target: 5'- cCGGU-CGUGACCCAUcaGGGCGUCCUCc -3' miRNA: 3'- -GCCGuGCGCUGGGUG--CUCGUAGGAGu -5' |
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| 17975 | 3' | -58.7 | NC_004665.1 | + | 9414 | 1.08 | 0.000356 |
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Target: 5'- uCGGCACGCGACCCACGAGCAUCCUCAc -3' miRNA: 3'- -GCCGUGCGCUGGGUGCUCGUAGGAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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