miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17978 5' -54.8 NC_004665.1 + 2870 0.66 0.596997
Target:  5'- -cUCGGUGCcguacuucaagucCCACUgaaGGGCGAUCUc- -3'
miRNA:   3'- guAGCCACG-------------GGUGAa--CCUGCUGGAag -5'
17978 5' -54.8 NC_004665.1 + 18254 0.66 0.586803
Target:  5'- cCGUUGGgGUUCACaaGGccgACGACCUUCg -3'
miRNA:   3'- -GUAGCCaCGGGUGaaCC---UGCUGGAAG- -5'
17978 5' -54.8 NC_004665.1 + 6507 0.67 0.553098
Target:  5'- uGUCGGUGacgaCCACgagGGAauccucuggGGCCUUCu -3'
miRNA:   3'- gUAGCCACg---GGUGaa-CCUg--------CUGGAAG- -5'
17978 5' -54.8 NC_004665.1 + 26859 0.67 0.553098
Target:  5'- uCGUCGaUGCUCAuguuCUUGGugG-CCUUCu -3'
miRNA:   3'- -GUAGCcACGGGU----GAACCugCuGGAAG- -5'
17978 5' -54.8 NC_004665.1 + 34163 0.67 0.530949
Target:  5'- gGUC-GUGCCCuCcUGaGCGACCUUCg -3'
miRNA:   3'- gUAGcCACGGGuGaACcUGCUGGAAG- -5'
17978 5' -54.8 NC_004665.1 + 16621 0.68 0.498363
Target:  5'- cCAUUGG-GUuaUCACUUGG-UGACCUUCu -3'
miRNA:   3'- -GUAGCCaCG--GGUGAACCuGCUGGAAG- -5'
17978 5' -54.8 NC_004665.1 + 20318 0.68 0.466701
Target:  5'- aCGUCGGaagucagcagGCCguCgaucUGGAUGACCUUCu -3'
miRNA:   3'- -GUAGCCa---------CGGguGa---ACCUGCUGGAAG- -5'
17978 5' -54.8 NC_004665.1 + 16798 0.69 0.456378
Target:  5'- uGUUGGUGCCCuucUGGGCGuCCa-- -3'
miRNA:   3'- gUAGCCACGGGugaACCUGCuGGaag -5'
17978 5' -54.8 NC_004665.1 + 13805 0.7 0.38781
Target:  5'- --aCGGUGUCCGCaua-ACGGCCUUCg -3'
miRNA:   3'- guaGCCACGGGUGaaccUGCUGGAAG- -5'
17978 5' -54.8 NC_004665.1 + 24504 0.71 0.343164
Target:  5'- gUAUUGGUGCCCACUgucacGGA-GACCc-- -3'
miRNA:   3'- -GUAGCCACGGGUGAa----CCUgCUGGaag -5'
17978 5' -54.8 NC_004665.1 + 7176 0.71 0.343164
Target:  5'- -cUUGGUGgUCGCaUGGACGACCUc- -3'
miRNA:   3'- guAGCCACgGGUGaACCUGCUGGAag -5'
17978 5' -54.8 NC_004665.1 + 11304 0.76 0.15736
Target:  5'- gAUCGGUGaCCACgauUGGuCGGCCUUCc -3'
miRNA:   3'- gUAGCCACgGGUGa--ACCuGCUGGAAG- -5'
17978 5' -54.8 NC_004665.1 + 22412 0.79 0.093397
Target:  5'- --cCGGUGCCUGCUUGGAaCGACCa-- -3'
miRNA:   3'- guaGCCACGGGUGAACCU-GCUGGaag -5'
17978 5' -54.8 NC_004665.1 + 13733 1.09 0.000649
Target:  5'- gCAUCGGUGCCCACUUGGACGACCUUCu -3'
miRNA:   3'- -GUAGCCACGGGUGAACCUGCUGGAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.