Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
17979 | 3' | -52.9 | NC_004665.1 | + | 18131 | 0.66 | 0.709942 |
Target: 5'- uGCUcGCCaucUCGcUUGGuCCAGCGCAcaGCg -3' miRNA: 3'- uCGA-CGG---AGU-AACU-GGUCGCGUuaCG- -5' |
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17979 | 3' | -52.9 | NC_004665.1 | + | 16944 | 0.66 | 0.709942 |
Target: 5'- uAGUUGCaUUCAcUGGCCAGCuuAAUGa -3' miRNA: 3'- -UCGACG-GAGUaACUGGUCGcgUUACg -5' |
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17979 | 3' | -52.9 | NC_004665.1 | + | 21062 | 0.66 | 0.706512 |
Target: 5'- gGGUUGCCgUUAggcggcuggggugaaGACCAGCGCAccaGCa -3' miRNA: 3'- -UCGACGG-AGUaa-------------CUGGUCGCGUua-CG- -5' |
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17979 | 3' | -52.9 | NC_004665.1 | + | 11678 | 0.66 | 0.686947 |
Target: 5'- gAGCgGCCUCAcgGGCCAccagcuucucGUgacgacgcuugGCGAUGCg -3' miRNA: 3'- -UCGaCGGAGUaaCUGGU----------CG-----------CGUUACG- -5' |
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17979 | 3' | -52.9 | NC_004665.1 | + | 826 | 0.66 | 0.684632 |
Target: 5'- uGGUUGCC-CugagaggcgaGACCGGCuCAGUGCg -3' miRNA: 3'- -UCGACGGaGuaa-------CUGGUCGcGUUACG- -5' |
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17979 | 3' | -52.9 | NC_004665.1 | + | 7762 | 0.67 | 0.65204 |
Target: 5'- cGgUGCCgUUGUUGguGCCAGCGUGAaacUGCa -3' miRNA: 3'- uCgACGG-AGUAAC--UGGUCGCGUU---ACG- -5' |
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17979 | 3' | -52.9 | NC_004665.1 | + | 4375 | 0.67 | 0.648534 |
Target: 5'- cGCUgGUCUCGgucauacgcucagcgGACUGGCGCAggGCu -3' miRNA: 3'- uCGA-CGGAGUaa-------------CUGGUCGCGUuaCG- -5' |
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17979 | 3' | -52.9 | NC_004665.1 | + | 13802 | 0.67 | 0.628645 |
Target: 5'- aGGCUGCUggcaUCAUcaaguucGACgAGCGCGAUaaGCa -3' miRNA: 3'- -UCGACGG----AGUAa------CUGgUCGCGUUA--CG- -5' |
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17979 | 3' | -52.9 | NC_004665.1 | + | 10512 | 0.67 | 0.628645 |
Target: 5'- aGGCUGCCc----GACCAGCGuCAuccAUGUc -3' miRNA: 3'- -UCGACGGaguaaCUGGUCGC-GU---UACG- -5' |
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17979 | 3' | -52.9 | NC_004665.1 | + | 13016 | 0.68 | 0.558893 |
Target: 5'- cGUUGCgCUCcaucugGGCCAGCGUccAUGCa -3' miRNA: 3'- uCGACG-GAGuaa---CUGGUCGCGu-UACG- -5' |
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17979 | 3' | -52.9 | NC_004665.1 | + | 12476 | 0.68 | 0.547443 |
Target: 5'- aGGUgGCCUCAUUGA--AGCGC-GUGUa -3' miRNA: 3'- -UCGaCGGAGUAACUggUCGCGuUACG- -5' |
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17979 | 3' | -52.9 | NC_004665.1 | + | 12588 | 0.69 | 0.502475 |
Target: 5'- uGGC-GCUUCAguUUGuCCAGCGCAgggAUGUc -3' miRNA: 3'- -UCGaCGGAGU--AACuGGUCGCGU---UACG- -5' |
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17979 | 3' | -52.9 | NC_004665.1 | + | 2476 | 0.69 | 0.502475 |
Target: 5'- aGGUUGaCUUCA---GCCAGCGCAA-GCa -3' miRNA: 3'- -UCGAC-GGAGUaacUGGUCGCGUUaCG- -5' |
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17979 | 3' | -52.9 | NC_004665.1 | + | 28710 | 0.72 | 0.351569 |
Target: 5'- gAGCUGCCUgaaggCAUggcaccUGuCCAGCGCAA-GCc -3' miRNA: 3'- -UCGACGGA-----GUA------ACuGGUCGCGUUaCG- -5' |
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17979 | 3' | -52.9 | NC_004665.1 | + | 16865 | 0.73 | 0.300875 |
Target: 5'- aAGCUccaacgugGCCUCAUuaagcUGGCCAGUG-AAUGCa -3' miRNA: 3'- -UCGA--------CGGAGUA-----ACUGGUCGCgUUACG- -5' |
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17979 | 3' | -52.9 | NC_004665.1 | + | 14978 | 1.13 | 0.000435 |
Target: 5'- aAGCUGCCUCAUUGACCAGCGCAAUGCg -3' miRNA: 3'- -UCGACGGAGUAACUGGUCGCGUUACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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