Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
17979 | 5' | -55.7 | NC_004665.1 | + | 31074 | 0.66 | 0.605756 |
Target: 5'- aGCGAAGUCGaugccacggccaUUCuUGGUggagucguagaugccACGCAUGaGGCg -3' miRNA: 3'- -UGCUUCAGC------------GAG-ACCA---------------UGCGUGC-CCG- -5' |
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17979 | 5' | -55.7 | NC_004665.1 | + | 18872 | 0.66 | 0.567835 |
Target: 5'- aAUGGAGUcCGCUaUGGacacCGCugGGGUu -3' miRNA: 3'- -UGCUUCA-GCGAgACCau--GCGugCCCG- -5' |
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17979 | 5' | -55.7 | NC_004665.1 | + | 10481 | 0.66 | 0.556787 |
Target: 5'- -gGAGGcCGCUgaGGUACuccCAcCGGGCa -3' miRNA: 3'- ugCUUCaGCGAgaCCAUGc--GU-GCCCG- -5' |
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17979 | 5' | -55.7 | NC_004665.1 | + | 32392 | 0.66 | 0.556787 |
Target: 5'- uCGAGGcccaCGCUUgGGacaaGCACGGGCa -3' miRNA: 3'- uGCUUCa---GCGAGaCCaug-CGUGCCCG- -5' |
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17979 | 5' | -55.7 | NC_004665.1 | + | 19786 | 0.67 | 0.545801 |
Target: 5'- uACGGgcAGcCGCUggGG-AUGCugGGGCa -3' miRNA: 3'- -UGCU--UCaGCGAgaCCaUGCGugCCCG- -5' |
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17979 | 5' | -55.7 | NC_004665.1 | + | 8826 | 0.67 | 0.545801 |
Target: 5'- uCGAGGUCGUgaugaccaacgaUCUGG-GCuuGCGGGUa -3' miRNA: 3'- uGCUUCAGCG------------AGACCaUGcgUGCCCG- -5' |
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17979 | 5' | -55.7 | NC_004665.1 | + | 7696 | 0.68 | 0.496283 |
Target: 5'- aACGAuGUCGCgguucucgccagucuUCUGGUccuUGUACGaGGCa -3' miRNA: 3'- -UGCUuCAGCG---------------AGACCAu--GCGUGC-CCG- -5' |
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17979 | 5' | -55.7 | NC_004665.1 | + | 15958 | 0.69 | 0.410748 |
Target: 5'- uCGAAGUCGCUU----GCGCggcagauACGGGCg -3' miRNA: 3'- uGCUUCAGCGAGaccaUGCG-------UGCCCG- -5' |
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17979 | 5' | -55.7 | NC_004665.1 | + | 32104 | 0.7 | 0.374679 |
Target: 5'- aGCGAGGUUGacgaUCUuGcGgGCACGGGCa -3' miRNA: 3'- -UGCUUCAGCg---AGAcCaUgCGUGCCCG- -5' |
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17979 | 5' | -55.7 | NC_004665.1 | + | 26618 | 0.7 | 0.339976 |
Target: 5'- aACucGGUgCGCUCUGGUGaGC-CGGGUg -3' miRNA: 3'- -UGcuUCA-GCGAGACCAUgCGuGCCCG- -5' |
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17979 | 5' | -55.7 | NC_004665.1 | + | 14944 | 1.12 | 0.000358 |
Target: 5'- aACGAAGUCGCUCUGGUACGCACGGGCa -3' miRNA: 3'- -UGCUUCAGCGAGACCAUGCGUGCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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