miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17979 5' -55.7 NC_004665.1 + 31074 0.66 0.605756
Target:  5'- aGCGAAGUCGaugccacggccaUUCuUGGUggagucguagaugccACGCAUGaGGCg -3'
miRNA:   3'- -UGCUUCAGC------------GAG-ACCA---------------UGCGUGC-CCG- -5'
17979 5' -55.7 NC_004665.1 + 18872 0.66 0.567835
Target:  5'- aAUGGAGUcCGCUaUGGacacCGCugGGGUu -3'
miRNA:   3'- -UGCUUCA-GCGAgACCau--GCGugCCCG- -5'
17979 5' -55.7 NC_004665.1 + 10481 0.66 0.556787
Target:  5'- -gGAGGcCGCUgaGGUACuccCAcCGGGCa -3'
miRNA:   3'- ugCUUCaGCGAgaCCAUGc--GU-GCCCG- -5'
17979 5' -55.7 NC_004665.1 + 32392 0.66 0.556787
Target:  5'- uCGAGGcccaCGCUUgGGacaaGCACGGGCa -3'
miRNA:   3'- uGCUUCa---GCGAGaCCaug-CGUGCCCG- -5'
17979 5' -55.7 NC_004665.1 + 8826 0.67 0.545801
Target:  5'- uCGAGGUCGUgaugaccaacgaUCUGG-GCuuGCGGGUa -3'
miRNA:   3'- uGCUUCAGCG------------AGACCaUGcgUGCCCG- -5'
17979 5' -55.7 NC_004665.1 + 19786 0.67 0.545801
Target:  5'- uACGGgcAGcCGCUggGG-AUGCugGGGCa -3'
miRNA:   3'- -UGCU--UCaGCGAgaCCaUGCGugCCCG- -5'
17979 5' -55.7 NC_004665.1 + 7696 0.68 0.496283
Target:  5'- aACGAuGUCGCgguucucgccagucuUCUGGUccuUGUACGaGGCa -3'
miRNA:   3'- -UGCUuCAGCG---------------AGACCAu--GCGUGC-CCG- -5'
17979 5' -55.7 NC_004665.1 + 15958 0.69 0.410748
Target:  5'- uCGAAGUCGCUU----GCGCggcagauACGGGCg -3'
miRNA:   3'- uGCUUCAGCGAGaccaUGCG-------UGCCCG- -5'
17979 5' -55.7 NC_004665.1 + 32104 0.7 0.374679
Target:  5'- aGCGAGGUUGacgaUCUuGcGgGCACGGGCa -3'
miRNA:   3'- -UGCUUCAGCg---AGAcCaUgCGUGCCCG- -5'
17979 5' -55.7 NC_004665.1 + 26618 0.7 0.339976
Target:  5'- aACucGGUgCGCUCUGGUGaGC-CGGGUg -3'
miRNA:   3'- -UGcuUCA-GCGAGACCAUgCGuGCCCG- -5'
17979 5' -55.7 NC_004665.1 + 14944 1.12 0.000358
Target:  5'- aACGAAGUCGCUCUGGUACGCACGGGCa -3'
miRNA:   3'- -UGCUUCAGCGAGACCAUGCGUGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.