miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17980 3' -56.6 NC_004665.1 + 13694 0.69 0.316363
Target:  5'- -aUGcGAGCGGCCuugagcugcguUGcUUGGGCCACUa- -3'
miRNA:   3'- ugAC-CUCGCCGG-----------AC-AACCUGGUGAag -5'
17980 3' -56.6 NC_004665.1 + 17156 1.08 0.00044
Target:  5'- cACUGGAGCGGCCUGUUGGACCACUUCc -3'
miRNA:   3'- -UGACCUCGCCGGACAACCUGGUGAAG- -5'
17980 3' -56.6 NC_004665.1 + 30452 0.66 0.50497
Target:  5'- aACUGGAugacaccaucCGGCCUcGUcgagcugacaucgUGGACCGCUUg -3'
miRNA:   3'- -UGACCUc---------GCCGGA-CA-------------ACCUGGUGAAg -5'
17980 3' -56.6 NC_004665.1 + 34584 0.74 0.156673
Target:  5'- gGCUGcGAG-GGUUUGUUGGGCUugUUCa -3'
miRNA:   3'- -UGAC-CUCgCCGGACAACCUGGugAAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.