miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17980 5' -61.4 NC_004665.1 + 24633 0.66 0.289907
Target:  5'- cCGCUGUCGCCCucGUGGGCggCACUAu- -3'
miRNA:   3'- aGCGACGGUGGGu-CGUCCG--GUGGUcu -5'
17980 5' -61.4 NC_004665.1 + 33429 0.66 0.289907
Target:  5'- -gGCUGCUuccggcaacCCCAGCgucAGGCCcaagguuggaACCAGAc -3'
miRNA:   3'- agCGACGGu--------GGGUCG---UCCGG----------UGGUCU- -5'
17980 5' -61.4 NC_004665.1 + 3763 0.66 0.28773
Target:  5'- aCGCUcGCCGCUCcuucgaggaaaucgAGCAGGuCCGCUccaAGAa -3'
miRNA:   3'- aGCGA-CGGUGGG--------------UCGUCC-GGUGG---UCU- -5'
17980 5' -61.4 NC_004665.1 + 32231 0.66 0.2827
Target:  5'- gUGCUGCCACUUc---GGCCACCAa- -3'
miRNA:   3'- aGCGACGGUGGGucguCCGGUGGUcu -5'
17980 5' -61.4 NC_004665.1 + 6587 0.66 0.268714
Target:  5'- cUCGauugGCCAgCCAcggauCAGGCgCACCAGAu -3'
miRNA:   3'- -AGCga--CGGUgGGUc----GUCCG-GUGGUCU- -5'
17980 5' -61.4 NC_004665.1 + 27894 0.67 0.255291
Target:  5'- gUCGCccGCUACguCCAGCAGGuUCGCCAu- -3'
miRNA:   3'- -AGCGa-CGGUG--GGUCGUCC-GGUGGUcu -5'
17980 5' -61.4 NC_004665.1 + 28446 0.67 0.254634
Target:  5'- uUCGCUGCCcguguggGCa-AGCAGGCUGCCu-- -3'
miRNA:   3'- -AGCGACGG-------UGggUCGUCCGGUGGucu -5'
17980 5' -61.4 NC_004665.1 + 22164 0.67 0.248145
Target:  5'- aUCGCUcGaCCAUCCAGCcguggguAGGCCGCaUGGGu -3'
miRNA:   3'- -AGCGA-C-GGUGGGUCG-------UCCGGUG-GUCU- -5'
17980 5' -61.4 NC_004665.1 + 1974 0.67 0.236193
Target:  5'- cUUGCgGCCcuugGCCCAGUA-GCCACCAc- -3'
miRNA:   3'- -AGCGaCGG----UGGGUCGUcCGGUGGUcu -5'
17980 5' -61.4 NC_004665.1 + 26779 0.67 0.224138
Target:  5'- gUUGaUUGCCGCUgAGaAGGCCACCAaGAa -3'
miRNA:   3'- -AGC-GACGGUGGgUCgUCCGGUGGU-CU- -5'
17980 5' -61.4 NC_004665.1 + 36244 0.67 0.224138
Target:  5'- cUUGUgGCUGCCCAGUacAGGCU-CCAGAa -3'
miRNA:   3'- -AGCGaCGGUGGGUCG--UCCGGuGGUCU- -5'
17980 5' -61.4 NC_004665.1 + 32824 0.68 0.206488
Target:  5'- aUUGCauggugGCgGcCCCGGUgacguuuAGGCCACCAGAa -3'
miRNA:   3'- -AGCGa-----CGgU-GGGUCG-------UCCGGUGGUCU- -5'
17980 5' -61.4 NC_004665.1 + 9809 0.68 0.201594
Target:  5'- aCGCUGCgACCguCAGgAGGUCACCu-- -3'
miRNA:   3'- aGCGACGgUGG--GUCgUCCGGUGGucu -5'
17980 5' -61.4 NC_004665.1 + 17117 1.09 0.00013
Target:  5'- uUCGCUGCCACCCAGCAGGCCACCAGAg -3'
miRNA:   3'- -AGCGACGGUGGGUCGUCCGGUGGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.