miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17981 3' -51.1 NC_004665.1 + 4653 0.66 0.8458
Target:  5'- -uUCG-CCUCAaccuguGCGUCUcuggUCGcgCUCCa -3'
miRNA:   3'- guAGCuGGAGU------UGCGGA----AGCuaGAGG- -5'
17981 3' -51.1 NC_004665.1 + 5141 0.67 0.794666
Target:  5'- cCAUCGAguagaccucauaggUCUCAGCGacgauCCagUCGAUCUCUg -3'
miRNA:   3'- -GUAGCU--------------GGAGUUGC-----GGa-AGCUAGAGG- -5'
17981 3' -51.1 NC_004665.1 + 5393 0.66 0.85472
Target:  5'- aGUCgGGCCauguggUCAACGCCUgcaaGAUCagCCg -3'
miRNA:   3'- gUAG-CUGG------AGUUGCGGAag--CUAGa-GG- -5'
17981 3' -51.1 NC_004665.1 + 5450 0.67 0.77707
Target:  5'- gCGUUGACCaCAugGCC--CGA-CUCCa -3'
miRNA:   3'- -GUAGCUGGaGUugCGGaaGCUaGAGG- -5'
17981 3' -51.1 NC_004665.1 + 9234 0.7 0.619923
Target:  5'- aCGUCGAUgUUCGAU-CCUUCGAUCUuCCa -3'
miRNA:   3'- -GUAGCUG-GAGUUGcGGAAGCUAGA-GG- -5'
17981 3' -51.1 NC_004665.1 + 9284 0.66 0.85472
Target:  5'- aGUCGaACUUCuggauCGCCUcggagacacaaUCGGUCUCg -3'
miRNA:   3'- gUAGC-UGGAGuu---GCGGA-----------AGCUAGAGg -5'
17981 3' -51.1 NC_004665.1 + 10351 0.68 0.755762
Target:  5'- aGUCGAUCUCA---CCUUCGGUgaCCa -3'
miRNA:   3'- gUAGCUGGAGUugcGGAAGCUAgaGG- -5'
17981 3' -51.1 NC_004665.1 + 10941 0.72 0.506819
Target:  5'- -uUCGACC---GCGCCUUCGAugaaaUCUUCg -3'
miRNA:   3'- guAGCUGGaguUGCGGAAGCU-----AGAGG- -5'
17981 3' -51.1 NC_004665.1 + 11747 0.7 0.643002
Target:  5'- aGUCGGCCUguACGCgCUUgcucaCGGUgUCCu -3'
miRNA:   3'- gUAGCUGGAguUGCG-GAA-----GCUAgAGG- -5'
17981 3' -51.1 NC_004665.1 + 12075 0.68 0.766492
Target:  5'- gCGUCaGCUUCAcccuugagguAUGCCUUCGAggUUUCCu -3'
miRNA:   3'- -GUAGcUGGAGU----------UGCGGAAGCU--AGAGG- -5'
17981 3' -51.1 NC_004665.1 + 12988 0.67 0.817604
Target:  5'- -uUCGACCUCGAaggUGCUgagCGA-CUCUa -3'
miRNA:   3'- guAGCUGGAGUU---GCGGaa-GCUaGAGG- -5'
17981 3' -51.1 NC_004665.1 + 13594 0.67 0.817604
Target:  5'- -cUCGACCaguacCAGCGCCguucgggUUGAUCgaaCCg -3'
miRNA:   3'- guAGCUGGa----GUUGCGGa------AGCUAGa--GG- -5'
17981 3' -51.1 NC_004665.1 + 16132 0.67 0.787482
Target:  5'- -cUCGcuguacGCCUCAACGCCUcguaccUGAUCgCCa -3'
miRNA:   3'- guAGC------UGGAGUUGCGGAa-----GCUAGaGG- -5'
17981 3' -51.1 NC_004665.1 + 18059 1.12 0.001102
Target:  5'- cCAUCGACCUCAACGCCUUCGAUCUCCu -3'
miRNA:   3'- -GUAGCUGGAGUUGCGGAAGCUAGAGG- -5'
17981 3' -51.1 NC_004665.1 + 19230 0.69 0.700297
Target:  5'- --gUGACCUCGACa---UCGGUCUCCu -3'
miRNA:   3'- guaGCUGGAGUUGcggaAGCUAGAGG- -5'
17981 3' -51.1 NC_004665.1 + 20300 0.66 0.85472
Target:  5'- cCGUCGAUCUgGAUGaCCUUCucggaaugcuuGAUgUCCu -3'
miRNA:   3'- -GUAGCUGGAgUUGC-GGAAG-----------CUAgAGG- -5'
17981 3' -51.1 NC_004665.1 + 25040 0.66 0.8458
Target:  5'- uCAUCaaGACCUCGG-GCCUgUCGAacgCUCUg -3'
miRNA:   3'- -GUAG--CUGGAGUUgCGGA-AGCUa--GAGG- -5'
17981 3' -51.1 NC_004665.1 + 29164 0.69 0.700297
Target:  5'- --cCGAUCUCAGCgGCCagcuugUUGGUCUUCg -3'
miRNA:   3'- guaGCUGGAGUUG-CGGa-----AGCUAGAGG- -5'
17981 3' -51.1 NC_004665.1 + 32575 0.68 0.722794
Target:  5'- uGUCGGCCUCAGucuuCGC--UCGGUCggCCu -3'
miRNA:   3'- gUAGCUGGAGUU----GCGgaAGCUAGa-GG- -5'
17981 3' -51.1 NC_004665.1 + 33852 0.66 0.836635
Target:  5'- cCAUUGACCUCGcuaagaaucuGCGCgUUCaGAUCa-- -3'
miRNA:   3'- -GUAGCUGGAGU----------UGCGgAAG-CUAGagg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.