miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17983 3' -57.8 NC_004665.1 + 9663 0.66 0.472531
Target:  5'- cCGGCCUCaAGGGCCucucgugggacucUGCCcGUGGCAg -3'
miRNA:   3'- -GCUGGGG-UCUCGGuu-----------AUGGuCGCCGU- -5'
17983 3' -57.8 NC_004665.1 + 6544 0.66 0.448196
Target:  5'- aGACCCUcaAGGGCCAGaUACUcguuGGCuuGGCGc -3'
miRNA:   3'- gCUGGGG--UCUCGGUU-AUGG----UCG--CCGU- -5'
17983 3' -57.8 NC_004665.1 + 25679 0.66 0.428457
Target:  5'- gGACUUCGcagacuGAGCCAAacgcUGCUGGCGGUAu -3'
miRNA:   3'- gCUGGGGU------CUCGGUU----AUGGUCGCCGU- -5'
17983 3' -57.8 NC_004665.1 + 3228 0.66 0.418782
Target:  5'- uGACCUCAGAgGCCAG---CAGCuuGGCAg -3'
miRNA:   3'- gCUGGGGUCU-CGGUUaugGUCG--CCGU- -5'
17983 3' -57.8 NC_004665.1 + 4453 0.67 0.40924
Target:  5'- cCGACCCCAGAGaag--GCCAcGuCGGUc -3'
miRNA:   3'- -GCUGGGGUCUCgguuaUGGU-C-GCCGu -5'
17983 3' -57.8 NC_004665.1 + 31088 0.67 0.388734
Target:  5'- aCGACCCCuugaauagcgaAGUCGAUGCCA-CGGCc -3'
miRNA:   3'- -GCUGGGGuc---------UCGGUUAUGGUcGCCGu -5'
17983 3' -57.8 NC_004665.1 + 25423 0.67 0.381446
Target:  5'- uGACCCCuGAGCagcgccgugaggCAAUcGCCAaCGGCAc -3'
miRNA:   3'- gCUGGGGuCUCG------------GUUA-UGGUcGCCGU- -5'
17983 3' -57.8 NC_004665.1 + 6706 0.67 0.381446
Target:  5'- uGugCUCGGAGCUGA-ACCAGCaugucgcuGGCAu -3'
miRNA:   3'- gCugGGGUCUCGGUUaUGGUCG--------CCGU- -5'
17983 3' -57.8 NC_004665.1 + 32713 0.69 0.313717
Target:  5'- gGugCCCAGA-CCAAUGCCAaCGGa- -3'
miRNA:   3'- gCugGGGUCUcGGUUAUGGUcGCCgu -5'
17983 3' -57.8 NC_004665.1 + 27261 0.7 0.242395
Target:  5'- aCGAuguCCCCAGAGUCGGUGCCuuccaCGGUc -3'
miRNA:   3'- -GCU---GGGGUCUCGGUUAUGGuc---GCCGu -5'
17983 3' -57.8 NC_004665.1 + 33944 0.71 0.229861
Target:  5'- -uGCCCCuaucgccgcuGGAGCUggUGCCgaAGUGGCAa -3'
miRNA:   3'- gcUGGGG----------UCUCGGuuAUGG--UCGCCGU- -5'
17983 3' -57.8 NC_004665.1 + 22396 0.71 0.202552
Target:  5'- aCGACCaCCAGAGCCucccagagagacuGUcaguugacgggccaGCuCAGCGGCAa -3'
miRNA:   3'- -GCUGG-GGUCUCGGu------------UA--------------UG-GUCGCCGU- -5'
17983 3' -57.8 NC_004665.1 + 28442 0.73 0.148209
Target:  5'- aGGgUCCAGAGCagcaccagCGAUGCCAGCGGUc -3'
miRNA:   3'- gCUgGGGUCUCG--------GUUAUGGUCGCCGu -5'
17983 3' -57.8 NC_004665.1 + 1405 0.74 0.13619
Target:  5'- -cGCCCCAaGGGCCAcAUGCUuGCGGCGa -3'
miRNA:   3'- gcUGGGGU-CUCGGU-UAUGGuCGCCGU- -5'
17983 3' -57.8 NC_004665.1 + 18880 1.08 0.00033
Target:  5'- gCGACCCCAGAGCCAAUACCAGCGGCAg -3'
miRNA:   3'- -GCUGGGGUCUCGGUUAUGGUCGCCGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.