Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17983 | 3' | -57.8 | NC_004665.1 | + | 6544 | 0.66 | 0.448196 |
Target: 5'- aGACCCUcaAGGGCCAGaUACUcguuGGCuuGGCGc -3' miRNA: 3'- gCUGGGG--UCUCGGUU-AUGG----UCG--CCGU- -5' |
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17983 | 3' | -57.8 | NC_004665.1 | + | 25679 | 0.66 | 0.428457 |
Target: 5'- gGACUUCGcagacuGAGCCAAacgcUGCUGGCGGUAu -3' miRNA: 3'- gCUGGGGU------CUCGGUU----AUGGUCGCCGU- -5' |
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17983 | 3' | -57.8 | NC_004665.1 | + | 3228 | 0.66 | 0.418782 |
Target: 5'- uGACCUCAGAgGCCAG---CAGCuuGGCAg -3' miRNA: 3'- gCUGGGGUCU-CGGUUaugGUCG--CCGU- -5' |
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17983 | 3' | -57.8 | NC_004665.1 | + | 4453 | 0.67 | 0.40924 |
Target: 5'- cCGACCCCAGAGaag--GCCAcGuCGGUc -3' miRNA: 3'- -GCUGGGGUCUCgguuaUGGU-C-GCCGu -5' |
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17983 | 3' | -57.8 | NC_004665.1 | + | 31088 | 0.67 | 0.388734 |
Target: 5'- aCGACCCCuugaauagcgaAGUCGAUGCCA-CGGCc -3' miRNA: 3'- -GCUGGGGuc---------UCGGUUAUGGUcGCCGu -5' |
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17983 | 3' | -57.8 | NC_004665.1 | + | 6706 | 0.67 | 0.381446 |
Target: 5'- uGugCUCGGAGCUGA-ACCAGCaugucgcuGGCAu -3' miRNA: 3'- gCugGGGUCUCGGUUaUGGUCG--------CCGU- -5' |
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17983 | 3' | -57.8 | NC_004665.1 | + | 27261 | 0.7 | 0.242395 |
Target: 5'- aCGAuguCCCCAGAGUCGGUGCCuuccaCGGUc -3' miRNA: 3'- -GCU---GGGGUCUCGGUUAUGGuc---GCCGu -5' |
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17983 | 3' | -57.8 | NC_004665.1 | + | 22396 | 0.71 | 0.202552 |
Target: 5'- aCGACCaCCAGAGCCucccagagagacuGUcaguugacgggccaGCuCAGCGGCAa -3' miRNA: 3'- -GCUGG-GGUCUCGGu------------UA--------------UG-GUCGCCGU- -5' |
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17983 | 3' | -57.8 | NC_004665.1 | + | 28442 | 0.73 | 0.148209 |
Target: 5'- aGGgUCCAGAGCagcaccagCGAUGCCAGCGGUc -3' miRNA: 3'- gCUgGGGUCUCG--------GUUAUGGUCGCCGu -5' |
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17983 | 3' | -57.8 | NC_004665.1 | + | 1405 | 0.74 | 0.13619 |
Target: 5'- -cGCCCCAaGGGCCAcAUGCUuGCGGCGa -3' miRNA: 3'- gcUGGGGU-CUCGGU-UAUGGuCGCCGU- -5' |
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17983 | 3' | -57.8 | NC_004665.1 | + | 18880 | 1.08 | 0.00033 |
Target: 5'- gCGACCCCAGAGCCAAUACCAGCGGCAg -3' miRNA: 3'- -GCUGGGGUCUCGGUUAUGGUCGCCGU- -5' |
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17983 | 3' | -57.8 | NC_004665.1 | + | 9663 | 0.66 | 0.472531 |
Target: 5'- cCGGCCUCaAGGGCCucucgugggacucUGCCcGUGGCAg -3' miRNA: 3'- -GCUGGGG-UCUCGGuu-----------AUGGuCGCCGU- -5' |
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17983 | 3' | -57.8 | NC_004665.1 | + | 25423 | 0.67 | 0.381446 |
Target: 5'- uGACCCCuGAGCagcgccgugaggCAAUcGCCAaCGGCAc -3' miRNA: 3'- gCUGGGGuCUCG------------GUUA-UGGUcGCCGU- -5' |
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17983 | 3' | -57.8 | NC_004665.1 | + | 32713 | 0.69 | 0.313717 |
Target: 5'- gGugCCCAGA-CCAAUGCCAaCGGa- -3' miRNA: 3'- gCugGGGUCUcGGUUAUGGUcGCCgu -5' |
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17983 | 3' | -57.8 | NC_004665.1 | + | 33944 | 0.71 | 0.229861 |
Target: 5'- -uGCCCCuaucgccgcuGGAGCUggUGCCgaAGUGGCAa -3' miRNA: 3'- gcUGGGG----------UCUCGGuuAUGG--UCGCCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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