miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17986 3' -56 NC_004665.1 + 17630 0.66 0.541986
Target:  5'- aCGAGCUGCUUUgCcUGcCACUCGGAg -3'
miRNA:   3'- gGCUCGACGGGAaGuACcGUGAGCUU- -5'
17986 3' -56 NC_004665.1 + 28221 0.66 0.540879
Target:  5'- aCCGGGCUucacccaGUCCaacgggUCAUGGUcCUCGAc -3'
miRNA:   3'- -GGCUCGA-------CGGGa-----AGUACCGuGAGCUu -5'
17986 3' -56 NC_004665.1 + 28323 0.66 0.530949
Target:  5'- aCG-GCUGCCCUUgGU-GUAgUCGAAg -3'
miRNA:   3'- gGCuCGACGGGAAgUAcCGUgAGCUU- -5'
17986 3' -56 NC_004665.1 + 30659 0.66 0.509131
Target:  5'- uCCGAGCUGCUCaugg-GGaCACUcCGAGa -3'
miRNA:   3'- -GGCUCGACGGGaaguaCC-GUGA-GCUU- -5'
17986 3' -56 NC_004665.1 + 30202 0.66 0.509131
Target:  5'- -aGAGCuguUGCCCUUgGUGGU-CUUGAGc -3'
miRNA:   3'- ggCUCG---ACGGGAAgUACCGuGAGCUU- -5'
17986 3' -56 NC_004665.1 + 33938 0.67 0.44618
Target:  5'- gCGAGCUGCCCcuaUCGccgcuggagcUGGUGC-CGAAg -3'
miRNA:   3'- gGCUCGACGGGa--AGU----------ACCGUGaGCUU- -5'
17986 3' -56 NC_004665.1 + 2794 0.68 0.426172
Target:  5'- uUGAGaucGCCCUUCAgUGGgACUUGAAg -3'
miRNA:   3'- gGCUCga-CGGGAAGU-ACCgUGAGCUU- -5'
17986 3' -56 NC_004665.1 + 28708 0.69 0.35179
Target:  5'- uUGAGCUGCCUgaaggCAUGGCACc---- -3'
miRNA:   3'- gGCUCGACGGGaa---GUACCGUGagcuu -5'
17986 3' -56 NC_004665.1 + 7557 0.71 0.250959
Target:  5'- gCGAGCUGCCUUUCuucgagaacgaggAUGGCAC-CGu- -3'
miRNA:   3'- gGCUCGACGGGAAG-------------UACCGUGaGCuu -5'
17986 3' -56 NC_004665.1 + 25182 1.08 0.000523
Target:  5'- gCCGAGCUGCCCUUCAUGGCACUCGAAa -3'
miRNA:   3'- -GGCUCGACGGGAAGUACCGUGAGCUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.