miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17987 3' -52.5 NC_004665.1 + 145 0.67 0.700359
Target:  5'- cUUGAGGgaa-CCGAGgcGAUCUCACUc -3'
miRNA:   3'- -AACUUCaucgGGCUCuaCUGGAGUGG- -5'
17987 3' -52.5 NC_004665.1 + 37251 0.67 0.700359
Target:  5'- cUUGAGGgaa-CCGAGgcGAUCUCACUc -3'
miRNA:   3'- -AACUUCaucgGGCUCuaCUGGAGUGG- -5'
17987 3' -52.5 NC_004665.1 + 4281 0.67 0.688895
Target:  5'- cUUGucGUAGCCagcucGGGUGguggugacaGCCUCACCg -3'
miRNA:   3'- -AACuuCAUCGGgc---UCUAC---------UGGAGUGG- -5'
17987 3' -52.5 NC_004665.1 + 35911 0.67 0.677371
Target:  5'- cUGAGcGUAGCUCGcaGUGGCUUgGCCa -3'
miRNA:   3'- aACUU-CAUCGGGCucUACUGGAgUGG- -5'
17987 3' -52.5 NC_004665.1 + 4935 0.67 0.665798
Target:  5'- -cGAAGaucGCCCGAGGUGuuCUUGCa -3'
miRNA:   3'- aaCUUCau-CGGGCUCUACugGAGUGg -5'
17987 3' -52.5 NC_004665.1 + 25466 0.67 0.654189
Target:  5'- -aGggGUcAGCuuGcGGAUGAUCUCAUUg -3'
miRNA:   3'- aaCuuCA-UCGggC-UCUACUGGAGUGG- -5'
17987 3' -52.5 NC_004665.1 + 31976 0.68 0.642559
Target:  5'- cUGAGGaAGCCCGuGAcuUGACCgcugaCACa -3'
miRNA:   3'- aACUUCaUCGGGCuCU--ACUGGa----GUGg -5'
17987 3' -52.5 NC_004665.1 + 15563 0.68 0.619277
Target:  5'- gUUGAAGUccuugucgcAGCucaCCGAGAUGACacgaUCACa -3'
miRNA:   3'- -AACUUCA---------UCG---GGCUCUACUGg---AGUGg -5'
17987 3' -52.5 NC_004665.1 + 24927 0.68 0.584475
Target:  5'- aUGGAGUucCCUGAGA-GACCcgacUCACCg -3'
miRNA:   3'- aACUUCAucGGGCUCUaCUGG----AGUGG- -5'
17987 3' -52.5 NC_004665.1 + 12493 0.71 0.430991
Target:  5'- cUUGAuGUAGUCCccaaAGGUGGCCUCAUUg -3'
miRNA:   3'- -AACUuCAUCGGGc---UCUACUGGAGUGG- -5'
17987 3' -52.5 NC_004665.1 + 25910 1.11 0.00078
Target:  5'- gUUGAAGUAGCCCGAGAUGACCUCACCg -3'
miRNA:   3'- -AACUUCAUCGGGCUCUACUGGAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.