miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17988 3' -54.4 NC_004665.1 + 8558 0.66 0.654867
Target:  5'- cGUGCCACUGGcgaaucUCACGGa--CGCCUAUg -3'
miRNA:   3'- -CGUGGUGGCU------AGUGUCgugGUGGAUG- -5'
17988 3' -54.4 NC_004665.1 + 6574 0.66 0.643438
Target:  5'- aCGCCACCGAcaUCgaGCuGCGCgACC-ACg -3'
miRNA:   3'- cGUGGUGGCU--AG--UGuCGUGgUGGaUG- -5'
17988 3' -54.4 NC_004665.1 + 18553 0.66 0.643438
Target:  5'- aGCACuCGCaCGAUUgGCAGUugCAgcuCCUGCg -3'
miRNA:   3'- -CGUG-GUG-GCUAG-UGUCGugGU---GGAUG- -5'
17988 3' -54.4 NC_004665.1 + 31804 0.66 0.631998
Target:  5'- aGUugCACCGAUCAaGGUgACCACa-ACg -3'
miRNA:   3'- -CGugGUGGCUAGUgUCG-UGGUGgaUG- -5'
17988 3' -54.4 NC_004665.1 + 9767 0.67 0.597721
Target:  5'- -uGCgGuuGAgucUCACAGCACCuuugaACCUGCc -3'
miRNA:   3'- cgUGgUggCU---AGUGUCGUGG-----UGGAUG- -5'
17988 3' -54.4 NC_004665.1 + 31460 0.67 0.590891
Target:  5'- cGCACCuacuugguagaccgaACCGAggauacCGGCACCcggaACCUGCu -3'
miRNA:   3'- -CGUGG---------------UGGCUagu---GUCGUGG----UGGAUG- -5'
17988 3' -54.4 NC_004665.1 + 29719 0.67 0.57501
Target:  5'- aGCACCACCGAacuucuucaggUACAGCG-CACggGCa -3'
miRNA:   3'- -CGUGGUGGCUa----------GUGUCGUgGUGgaUG- -5'
17988 3' -54.4 NC_004665.1 + 33502 0.67 0.563727
Target:  5'- uUACCggaACCGAg-GCAGCGCCACgaACc -3'
miRNA:   3'- cGUGG---UGGCUagUGUCGUGGUGgaUG- -5'
17988 3' -54.4 NC_004665.1 + 17725 0.68 0.508366
Target:  5'- gGCACCGCUcuGAUCuACcuacCACCACCUGa -3'
miRNA:   3'- -CGUGGUGG--CUAG-UGuc--GUGGUGGAUg -5'
17988 3' -54.4 NC_004665.1 + 28472 0.68 0.50187
Target:  5'- aGCACCACCGGgcacaggaacguaggUCagaggguccagaGCAGCACCAgCg-- -3'
miRNA:   3'- -CGUGGUGGCU---------------AG------------UGUCGUGGUgGaug -5'
17988 3' -54.4 NC_004665.1 + 1524 0.72 0.308919
Target:  5'- gGCACCACCGAuacUCACA--GCCAUCUc- -3'
miRNA:   3'- -CGUGGUGGCU---AGUGUcgUGGUGGAug -5'
17988 3' -54.4 NC_004665.1 + 20803 0.72 0.285792
Target:  5'- aCGCCAUCGGcuggguuguugUCGcCAGCGCCACCcACg -3'
miRNA:   3'- cGUGGUGGCU-----------AGU-GUCGUGGUGGaUG- -5'
17988 3' -54.4 NC_004665.1 + 28619 1.13 0.000371
Target:  5'- cGCACCACCGAUCACAGCACCACCUACa -3'
miRNA:   3'- -CGUGGUGGCUAGUGUCGUGGUGGAUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.