miRNA display CGI


Results 1 - 20 of 22 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17992 3' -48.1 NC_004665.1 + 3835 0.66 0.936517
Target:  5'- -cGGACCUGcuCGAUuUCCUcGAAGGaGCg -3'
miRNA:   3'- caUCUGGAUu-GCUAuGGGA-UUUCC-CG- -5'
17992 3' -48.1 NC_004665.1 + 7335 0.66 0.936517
Target:  5'- ---aGCCUGACuucggcaACCCUGAgaAGGGCu -3'
miRNA:   3'- caucUGGAUUGcua----UGGGAUU--UCCCG- -5'
17992 3' -48.1 NC_004665.1 + 35471 0.66 0.930679
Target:  5'- --uGGCCUGcaaGAUACCCUAAAGa-- -3'
miRNA:   3'- cauCUGGAUug-CUAUGGGAUUUCccg -5'
17992 3' -48.1 NC_004665.1 + 28043 0.66 0.930679
Target:  5'- --cGACCagAACGGU-CCagaGAAGGGCg -3'
miRNA:   3'- cauCUGGa-UUGCUAuGGga-UUUCCCG- -5'
17992 3' -48.1 NC_004665.1 + 10925 0.67 0.924516
Target:  5'- -cAGGCC-AACGAUGUCCUGAAcGGUu -3'
miRNA:   3'- caUCUGGaUUGCUAUGGGAUUUcCCG- -5'
17992 3' -48.1 NC_004665.1 + 27687 0.67 0.924516
Target:  5'- --uGACCUcAugGGcACCUacAAGGGCg -3'
miRNA:   3'- cauCUGGA-UugCUaUGGGauUUCCCG- -5'
17992 3' -48.1 NC_004665.1 + 36979 0.67 0.918028
Target:  5'- ----cCCUAACuggucuccauagGAUGCCCUuuAGGGUa -3'
miRNA:   3'- caucuGGAUUG------------CUAUGGGAuuUCCCG- -5'
17992 3' -48.1 NC_004665.1 + 25114 0.67 0.911216
Target:  5'- ---aACCUuuCGAgUGCCaUGAAGGGCa -3'
miRNA:   3'- caucUGGAuuGCU-AUGGgAUUUCCCG- -5'
17992 3' -48.1 NC_004665.1 + 16872 0.67 0.911216
Target:  5'- -aAGACCauGCGccacuggacGCCCaGAAGGGCa -3'
miRNA:   3'- caUCUGGauUGCua-------UGGGaUUUCCCG- -5'
17992 3' -48.1 NC_004665.1 + 6072 0.67 0.904083
Target:  5'- -aAGACCUccuucACGAUcuGCCagacGAGGGCa -3'
miRNA:   3'- caUCUGGAu----UGCUA--UGGgau-UUCCCG- -5'
17992 3' -48.1 NC_004665.1 + 846 0.68 0.888868
Target:  5'- -aGGGCCUGcaagccucccuAUGGuUGCCCUGAGaGGCg -3'
miRNA:   3'- caUCUGGAU-----------UGCU-AUGGGAUUUcCCG- -5'
17992 3' -48.1 NC_004665.1 + 33577 0.68 0.888868
Target:  5'- -aAGACCUccauaaaGAagGCCCcGAAGGGCc -3'
miRNA:   3'- caUCUGGAuug----CUa-UGGGaUUUCCCG- -5'
17992 3' -48.1 NC_004665.1 + 22515 0.68 0.863761
Target:  5'- cUGGACCUGAUaGAUgaACCCacUGAgcAGGGUg -3'
miRNA:   3'- cAUCUGGAUUG-CUA--UGGG--AUU--UCCCG- -5'
17992 3' -48.1 NC_004665.1 + 19805 0.69 0.836106
Target:  5'- -aAGcCCUcGACGGUGCUCUuacGGGCa -3'
miRNA:   3'- caUCuGGA-UUGCUAUGGGAuuuCCCG- -5'
17992 3' -48.1 NC_004665.1 + 2879 0.7 0.810295
Target:  5'- cGUGGAauCCU--CGGUGCCguacuucaagucccaCUGAAGGGCg -3'
miRNA:   3'- -CAUCU--GGAuuGCUAUGG---------------GAUUUCCCG- -5'
17992 3' -48.1 NC_004665.1 + 86 0.7 0.806186
Target:  5'- -gAGAUCgccuCGGUuCCCUcAAGGGCa -3'
miRNA:   3'- caUCUGGauu-GCUAuGGGAuUUCCCG- -5'
17992 3' -48.1 NC_004665.1 + 37192 0.7 0.806186
Target:  5'- -gAGAUCgccuCGGUuCCCUcAAGGGCa -3'
miRNA:   3'- caUCUGGauu-GCUAuGGGAuUUCCCG- -5'
17992 3' -48.1 NC_004665.1 + 2163 0.7 0.763361
Target:  5'- -gAGACC-AACGAggaaGCCUUGAAGGcGUg -3'
miRNA:   3'- caUCUGGaUUGCUa---UGGGAUUUCC-CG- -5'
17992 3' -48.1 NC_004665.1 + 16060 0.71 0.740942
Target:  5'- ---aACCUAACGGUcCCCUAuggccauaguGAGGGUu -3'
miRNA:   3'- caucUGGAUUGCUAuGGGAU----------UUCCCG- -5'
17992 3' -48.1 NC_004665.1 + 25079 0.73 0.611482
Target:  5'- --uGACCU-GCGcuugACCCUuGAGGGCg -3'
miRNA:   3'- cauCUGGAuUGCua--UGGGAuUUCCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.