miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17993 5' -54 NC_004665.1 + 32356 0.66 0.703869
Target:  5'- aGAGGCGGUCUUAgcggcUUCAGAcgcagcucguugGGUgGCa -3'
miRNA:   3'- gCUCCGCUAGAGU-----GAGUCU------------CCAgUGg -5'
17993 5' -54 NC_004665.1 + 37148 0.68 0.591158
Target:  5'- aGAGGUGAccauucagauuUUUCugUCAGAuucuuaaaGGUCAUCc -3'
miRNA:   3'- gCUCCGCU-----------AGAGugAGUCU--------CCAGUGG- -5'
17993 5' -54 NC_004665.1 + 32103 0.68 0.557584
Target:  5'- gCGAGGUugacGAUCUUGCgggcaCGGgcaucaAGGUCACCa -3'
miRNA:   3'- -GCUCCG----CUAGAGUGa----GUC------UCCAGUGG- -5'
17993 5' -54 NC_004665.1 + 29859 0.69 0.535501
Target:  5'- -uGGGCGAUCa-GCUCAGGcGUUGCCa -3'
miRNA:   3'- gcUCCGCUAGagUGAGUCUcCAGUGG- -5'
17993 5' -54 NC_004665.1 + 25495 0.69 0.492336
Target:  5'- cCGuuGGCGAUugcCUCacggcgcuGCUCAGGGGUCAgCu -3'
miRNA:   3'- -GCu-CCGCUA---GAG--------UGAGUCUCCAGUgG- -5'
17993 5' -54 NC_004665.1 + 31719 0.7 0.450844
Target:  5'- uCGAGu--AUCUCGCUCGGAaguucguuguGGUCACCu -3'
miRNA:   3'- -GCUCcgcUAGAGUGAGUCU----------CCAGUGG- -5'
17993 5' -54 NC_004665.1 + 30047 0.71 0.392416
Target:  5'- cCGAGaacgaCGAgccaUCGCUCAGAGG-CACCg -3'
miRNA:   3'- -GCUCc----GCUag--AGUGAGUCUCCaGUGG- -5'
17993 5' -54 NC_004665.1 + 22929 0.74 0.262459
Target:  5'- -uGGGUcGUCaUCACUCAG-GGUCGCCa -3'
miRNA:   3'- gcUCCGcUAG-AGUGAGUCuCCAGUGG- -5'
17993 5' -54 NC_004665.1 + 37241 1.13 0.000459
Target:  5'- cCGAGGCGAUCUCACUCAGAGGUCACCg -3'
miRNA:   3'- -GCUCCGCUAGAGUGAGUCUCCAGUGG- -5'
17993 5' -54 NC_004665.1 + 135 1.13 0.000459
Target:  5'- cCGAGGCGAUCUCACUCAGAGGUCACCg -3'
miRNA:   3'- -GCUCCGCUAGAGUGAGUCUCCAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.